52bf4bd9bba2e42934d14abb7b33e5b9d3e49380 pauline Wed Jan 28 13:05:09 2015 -0800 Abridged entries were missing for last 3 announcements. Prepping for survey relaunch. refs #14714 diff --git src/hg/htdocs/indexNews.html src/hg/htdocs/indexNews.html index 7eab3d8..31a2de0 100755 --- src/hg/htdocs/indexNews.html +++ src/hg/htdocs/indexNews.html @@ -42,33 +42,31 @@ <font face="courier" size="3"><b>23 January 2015 - Genome Browser YouTube Channel</b></font> <p>We are pleased to announce the release of the UCSC Genome Browser <a href="http://bit.ly/genomebrowserYoutube" target=_blank">YouTube channel</a>. The channel contains short videos showing how to use the Genome Browser and associated tools to solve selected problems. The videos were produced by Robert Kuhn and Pauline Fujita, with assistance from Luvina Guruvadoo, Jonathan Casper, Matt Speir and the rest of the Browser staff. </p> <p>See also the other materials on our <a href="http://bit.ly/genomebrowserTraining">training page</a>. </p> <p>If you have any comments or questions - including requests for future video topics - please send them to our training group at: </p> - <p>ucscgbtraining@soe.ucsc.edu - </p> <hr> <p> <font face="courier" size="3"><b>15 January 2015 - Proteomics Data Now Available in Genome Browser</b></font> <p> We are pleased to announce the release of proteomics data for the human hg19 assembly. Data from the National Cancer Institute's (NCI) <a href="http://proteomics.cancer.gov/programs/cptacnetwork" target="_blank"> Clinical Proteomic Tumor Analysis Consortium (CPTAC)</a> is now available in the UCSC Genome Browser as a public track hub. This track hub contains peptides that were identified by CPTAC in their deep mass spectrometry based characterization of the proteome content of breast, colorectal and ovarian cancer biospecimens that were initially @@ -82,60 +80,89 @@ Track Hub gateway page</a> and select "CPTAC Hub v1" from the Public Hubs list. Please direct any queries to the Fenyo Lab at <a href="mailto:info@fenyolab.org">info@fenyolab.org</a>. <p> In addition, we have also released a <a href="http://www.peptideatlas.org/" target="_blank"> PeptideAtlas</a> track which displays peptide identifications from the <a href="https://db.systemsbiology.net/sbeams/cgi/PeptideAtlas/buildDetails?atlas_build_id=433" target="_blank"> PeptideAtlas August 2014 (Build 433) Human build</a>. This build, based on 971 samples containing more than 420 million spectra, identified over a million distinct peptides covering more than 15,000 canonical proteins. To read more about this track, please see the <a href="http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=peptideAtlas" target="_blank"> track description page</a>. Many thanks to Eric Deutsch, Zhi Sun, and the PeptideAtlas team at the Institute for Systems Biology, Seattle for providing this data. </p> - - <hr> <p> <font face="courier" size="3"><b>19 December 2014 - New Cow (bosTau8) Assembly Now Available in the Genome Browser</b></font> <p> We are pleased to announce the release of a Genome Browser for the June 2014 assembly of cow, <i>Bos taurus</i> (Bos_taurus_UMD 3.1.1, UCSC version bosTau8). This updated cow assembly was provided by the <a href="http://www.cbcb.umd.edu/" target="_blank">UMD Center for Bioinformatics and Computational Biology</a> (CBCB). This assembly is an update to the previous UMD 3.1 (bosTau6) assembly. UMD 3.1 contained 138 unlocalized contigs that were found to be contaminants. These have been suppressed in UMD 3.1.1. <p> Bulk downloads of the sequence and annotation data are available via the Genome Browser <a href="ftp://hgdownload.cse.ucsc.edu/goldenPath/bosTau8/">FTP server</a> or the <a href="http://hgdownload.cse.ucsc.edu/downloads.html#cow">Downloads</a> page. These data have <a href="/goldenPath/credits.html#cow_credits">specific conditions for use</a>. The cow browser annotation tracks were generated by UCSC and collaborators worldwide. See the <a href="/goldenPath/credits.html#cow_credits">Credits</a> page for a detailed list of the organizations and individuals who contributed to this release. </p> <hr> <!-- start archives --> +<!-- + <p> + <font face="courier" size="3"><b>23 January 2015 - Genome Browser YouTube Channel</b></font> + + <p>We are pleased to announce the release of the UCSC Genome Browser + <a href="http://bit.ly/genomebrowserYoutube" target=_blank">YouTube channel</a>. + The channel contains short videos showing how to use the Genome Browser and associated + tools to solve selected problems.<a href="goldenPath/newsarch.html#012315">Read more</a>. + + <p> + <font face="courier" size="3"><b>15 January 2015 - + Proteomics Data Now Available in Genome Browser</b></font> + </p> + <p> + We are pleased to announce the release of proteomics data for the + human hg19 assembly. Data from the National Cancer Institute's (NCI) + <a href="http://proteomics.cancer.gov/programs/cptacnetwork" target="_blank"> + Clinical Proteomic Tumor Analysis Consortium (CPTAC)</a> is now available + in the UCSC Genome Browser as a public track hub + <a href="goldenPath/newsarch.html#011515">Read more</a>. + + <p> + <font face="courier" size="3"><b>19 December 2014 - + New Cow (bosTau8) Assembly Now Available in the Genome Browser</b></font> + </p> + <p> + We are pleased to announce the release of a Genome Browser for the June 2014 assembly + of cow, <i>Bos taurus</i> (Bos_taurus_UMD 3.1.1, UCSC version bosTau8). + <a href="goldenPath/newsarch.html#121914">Read more</a>. + </p> +--> <p> <font face="courier" size="3"><b>12 December 2014 - New <i>D. melanogaster</i> (dm6) Assembly Now Available in the Genome Browser: </b></font> We are pleased to announce the release of a Genome Browser for the August 2014 assembly of <i>Drosophila melanogaster</i> (BDGP Release 6, UCSC version dm6). <a href="goldenPath/newsarch.html#121214">Read more</a>. <p> <font face="courier" size="3"><b>29 October 2014 - Genome Browser in a Box (GBiB)</b>:</font> Sometimes you just want to keep your genomics data to yourself. Have you ever hesitated when uploading your data set into the UCSC Genome Browser? If so, you'll be happy to know that we have created a stand-alone personal version: Genome Browser in a Box (GBiB). <a href="goldenPath/newsarch.html#102914">Read more</a>.