37bccf08f043153ebad2bc6bfe4f5860a298ee9c max Mon Mar 9 03:09:49 2015 -0700 typo in help message diff --git src/hg/hgBeacon/help.txt src/hg/hgBeacon/help.txt index f62b782..cda3143 100644 --- src/hg/hgBeacon/help.txt +++ src/hg/hgBeacon/help.txt @@ -1,25 +1,25 @@
 A Genomics Alliance Beacon at UCSC, see http://ga4gh.org/#/beacon
 
 In collaboration with the Leiden Open Variation Database and Biobase/HGMD.
 
 parameters:
 - chromosome: 1 - 22, X, Y or M
 - position: 0-based position on chromosome
 - dataset: either "lovd" or "hgmd". If not provided, queries both LOVD and HGMD.
-"- reference: optional. if specified, has to be "GRCh37"
+- reference: optional. if specified, has to be "GRCh37"
 - alternateBases: A,C,T or G. Ignored for HGMD (HGMD gives out only
   positions, not the alleles, these are only on their website)
 - format: if "text",  does not return JSON, but just one of the words "true",
       "false" or "overlap".  Easier to parse for simple shell scripts.
 
 For alleles with a "true" reply, you can get more details about a variant from
 the source databases:
 - dataset lovd: Use the LOVD API to get all info, see chapter 9 of the 
   LOVD manual, http://www.lovd.nl/3.0/docs/LOVD_manual_3.0.pdf
   Or search manually on http://www.lovd.nl/3.0/home
 - dataset hgmd: Create an account on http://www.hgmd.cf.ac.uk/ and search
   manually for the variant.
 
 Note that only single-basepair substitutions are available from both databases.
 Insertions and deletions might be available with later versions of the Beacon