e1416402b095c32aca50aba19a3f7e75c2aa3412
max
  Thu Mar 5 16:16:31 2015 -0800
during its last code review, hgBeacon was criticized,
partially, because it's calling bigBedInfo and bigBedToBed and so requires
copies of these in the cgi-bin dir. This change makes hgBeacon easier to
install as it does not need the external tools anymore.
It also adds a tester that can be pointed at the hgBeacon to see if it
works, at least the basic functions.
It also makes it easier to import VCF files, as it can import these
directly.

diff --git src/utils/bigBedInfo/makefile src/utils/bigBedInfo/makefile
index b7077ca..cf0e4a3 100644
--- src/utils/bigBedInfo/makefile
+++ src/utils/bigBedInfo/makefile
@@ -1,33 +1,5 @@
 kentSrc = ../..
 A = bigBedInfo
 include $(kentSrc)/inc/userApp.mk
 L += -lm -lz ${SOCKETLIB}
 
-# the following was mostly copied from ~/kent/src/hg/makeDb/hgLoadBed/makefile
-cgi:: compile
-	chmod a+rx $A${EXE}
-	@if [ ! -d "${CGI_BIN}-${USER}/utils" ]; then \
-		${MKDIR} ${CGI_BIN}-${USER}/utils; \
-	fi
-	rm -f ${CGI_BIN}-${USER}/utils/$A
-	mv $A${EXE} ${CGI_BIN}-${USER}/utils/$A
-
-alpha:: strip
-	@if [ ! -d "${CGI_BIN}/utils" ]; then \
-		${MKDIR} ${CGI_BIN}/utils; \
-	fi
-	rm -f ${CGI_BIN}/utils/$A
-	mv $A${EXE} ${CGI_BIN}/utils/$A
-
-beta:: strip
-	@if [ ! -d "${CGI_BIN}-beta/utils" ]; then \
-		${MKDIR} ${CGI_BIN}-beta/utils; \
-	fi
-	rm -f ${CGI_BIN}-beta/utils/$A
-	mv $A${EXE} ${CGI_BIN}-beta/utils/$A
-
-strip::  compile
-	${STRIP} $A${EXE}
-	chmod g+w $A${EXE}
-	chmod a+rx $A${EXE}
-