0aaeab5b5b0d708cd9e966b1bb7d0fb9d2b1039a
hartera
  Tue Mar 24 14:21:31 2015 -0700
Removed old code that was commented out.

diff --git src/hg/lib/ucscRetroInfo.c src/hg/lib/ucscRetroInfo.c
index bb108b8..f06c452 100644
--- src/hg/lib/ucscRetroInfo.c
+++ src/hg/lib/ucscRetroInfo.c
@@ -90,31 +90,30 @@
 safecpy(ret->gStrand, sizeof(ret->gStrand), row[18]);
 ret->parentSpliceCount = sqlUnsigned(row[19]);
 ret->geneOverlap = sqlUnsigned(row[20]);
 ret->polyA = sqlUnsigned(row[21]);
 ret->polyAstart = sqlSigned(row[22]);
 ret->exonCover = sqlSigned(row[23]);
 ret->intronCount = sqlUnsigned(row[24]);
 ret->bestAliCount = sqlUnsigned(row[25]);
 ret->matches = sqlUnsigned(row[26]);
 ret->qSize = sqlUnsigned(row[27]);
 ret->qEnd = sqlUnsigned(row[28]);
 ret->tReps = sqlUnsigned(row[29]);
 ret->coverage = sqlUnsigned(row[30]);
 ret->label = sqlSigned(row[31]);
 ret->milliBad = sqlUnsigned(row[32]);
-//ret->oldScore = sqlUnsigned(row[33]);
 ret->alignGapCount = sqlSigned(row[33]);
 ret->processedIntrons = sqlSigned(row[34]);
 ret->conservedSpliceSites = sqlSigned(row[35]);
 ret->maxOverlap = sqlSigned(row[36]);
 ret->refSeq = cloneString(row[37]);
 ret->rStart = sqlSigned(row[38]);
 ret->rEnd = sqlSigned(row[39]);
 ret->mgc = cloneString(row[40]);
 ret->mStart = sqlSigned(row[41]);
 ret->mEnd = sqlSigned(row[42]);
 ret->kgName = cloneString(row[43]);
 ret->kStart = sqlSigned(row[44]);
 ret->kEnd = sqlSigned(row[45]);
 ret->overName = cloneString(row[46]);
 ret->overStart = sqlSigned(row[47]);
@@ -211,31 +210,30 @@
 sqlFixedStringComma(&s, ret->gStrand, sizeof(ret->gStrand));
 ret->parentSpliceCount = sqlUnsignedComma(&s);
 ret->geneOverlap = sqlUnsignedComma(&s);
 ret->polyA = sqlUnsignedComma(&s);
 ret->polyAstart = sqlSignedComma(&s);
 ret->exonCover = sqlSignedComma(&s);
 ret->intronCount = sqlUnsignedComma(&s);
 ret->bestAliCount = sqlUnsignedComma(&s);
 ret->matches = sqlUnsignedComma(&s);
 ret->qSize = sqlUnsignedComma(&s);
 ret->qEnd = sqlUnsignedComma(&s);
 ret->tReps = sqlUnsignedComma(&s);
 ret->coverage = sqlUnsignedComma(&s);
 ret->label = sqlSignedComma(&s);
 ret->milliBad = sqlUnsignedComma(&s);
-//ret->oldScore = sqlUnsignedComma(&s);
 ret->alignGapCount = sqlSignedComma(&s);
 ret->processedIntrons = sqlSignedComma(&s);
 ret->conservedSpliceSites = sqlSignedComma(&s);
 ret->maxOverlap = sqlSignedComma(&s);
 ret->refSeq = sqlStringComma(&s);
 ret->rStart = sqlSignedComma(&s);
 ret->rEnd = sqlSignedComma(&s);
 ret->mgc = sqlStringComma(&s);
 ret->mStart = sqlSignedComma(&s);
 ret->mEnd = sqlSignedComma(&s);
 ret->kgName = sqlStringComma(&s);
 ret->kStart = sqlSignedComma(&s);
 ret->kEnd = sqlSignedComma(&s);
 ret->overName = sqlStringComma(&s);
 ret->overStart = sqlSignedComma(&s);
@@ -367,32 +365,30 @@
 fputc(sep,f);
 fprintf(f, "%u", el->matches);
 fputc(sep,f);
 fprintf(f, "%u", el->qSize);
 fputc(sep,f);
 fprintf(f, "%u", el->qEnd);
 fputc(sep,f);
 fprintf(f, "%u", el->tReps);
 fputc(sep,f);
 fprintf(f, "%u", el->coverage);
 fputc(sep,f);
 fprintf(f, "%d", el->label);
 fputc(sep,f);
 fprintf(f, "%u", el->milliBad);
 fputc(sep,f);
-//fprintf(f, "%u", el->oldScore);
-//fputc(sep,f);
 fprintf(f, "%d", el->alignGapCount);
 fputc(sep,f);
 fprintf(f, "%d", el->processedIntrons);
 fputc(sep,f);
 fprintf(f, "%d", el->conservedSpliceSites);
 fputc(sep,f);
 fprintf(f, "%d", el->maxOverlap);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->refSeq);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 fprintf(f, "%d", el->rStart);
 fputc(sep,f);
 fprintf(f, "%d", el->rEnd);