6696987406845625c252a13b690e0c4d7d9e59fa
max
Thu Mar 26 06:48:48 2015 -0700
This is a go at libifing the CGI startup code. For all CGIs, we need to
call a few basic setup funtions, like UDC config and CGI apoptosis.
(For most CGIs also bottleneck). Instead of adding it to all of our
30+ CGIs, I changed the cart*Shell functions. I think most CGIs call
at least one of these functions. This commit removes the existing
copy/pasted code from a few CGIs and replaces it with one call.
Adding this to the cart-setup means that (like before), UDC is
setup even for small JSON calls and a process is spawned to watch
the CGI and kill it ("Apoptosis"). Any comments on whether this should
be implemented differently are appreciated. I have not added bottleneck
to this function right now as apparently we're calling bottleneck only
from some of our CGIs.
diff --git src/hg/hgc/vcfClick.c src/hg/hgc/vcfClick.c
index c1d23ac..bb65d7a 100644
--- src/hg/hgc/vcfClick.c
+++ src/hg/hgc/vcfClick.c
@@ -438,33 +438,30 @@
for (rec = vcff->records; rec != NULL; rec = rec->next)
if (rec->chromStart == start && rec->chromEnd == end) // in pgSnp mode, don't get name
vcfRecordDetails(tdb, rec);
}
else
printf("Sorry, unable to open %s<BR>\n", fileOrUrl);
printTrackHtml(tdb);
}
#ifdef USE_TABIX
void doVcfTabixDetails(struct trackDb *tdb, char *item)
/* Show details of an alignment from a VCF file compressed and indexed by tabix. */
{
-knetUdcInstall();
-if (udcCacheTimeout() < 300)
- udcSetCacheTimeout(300);
struct sqlConnection *conn = hAllocConnTrack(database, tdb);
char *fileOrUrl = bbiNameFromSettingOrTableChrom(tdb, conn, tdb->table, seqName);
hFreeConn(&conn);
doVcfDetailsCore(tdb, fileOrUrl, TRUE);
}
#endif // no USE_TABIX
void doVcfDetails(struct trackDb *tdb, char *item)
/* Show details of an alignment from an uncompressed VCF file. */
{
struct customTrack *ct = lookupCt(tdb->track);
struct sqlConnection *conn = NULL;