a9d79df3cbd3f62b8607f053db951ccc0b7647da
max
Thu Mar 26 05:15:35 2015 -0700
previous commit was way overzealous, re-adding stubs for old gisaid code.
Should have not touched this, sorry.
diff --git src/hg/hgc/virusClick.c src/hg/hgc/virusClick.c
index 19e8616..53a6672 100644
--- src/hg/hgc/virusClick.c
+++ src/hg/hgc/virusClick.c
@@ -592,31 +592,31 @@
sqlFreeResult(&sr);
hFreeConn(&conn);
htmlHorizontalLine();
printf("
Protein Structure Analysis and Prediction
");
printf("3D Structure Prediction of consensus sequence (with variations of all selected sequences highlighted):");
printf("
PDB file: ");
char pdbUrl[PATH_LEN];
safef(pdbUrl, sizeof(pdbUrl), "%s/%s/decoys/%s.try1-opt3.pdb.gz", getH1n1StructUrl(), item, item);
// Modeller stuff
char modelPdbUrl[PATH_LEN];
if (getH1n1Model(gene, modelPdbUrl))
{
- char *selectFile = cartOptionalString(cart, gisaidAaSeqList);
+ char *selectFile = cartOptionalString(cart, "gisaidTable.gisaidAaSeqList");
struct tempName imageFile, chimeraScript, chimerax;
mkH1n1StructData(gene, selectFile, NULL, &imageFile, &chimeraScript);
mkChimerax(gene, modelPdbUrl, chimeraScript.forCgi, &chimerax);
printf("%s, view with Chimera
\n",
modelPdbUrl, gene, chimerax.forHtml);
printf("\n");
printf("\n");
printf(" | ", imageFile.forHtml);
printf("
\n");
printf("
\n");
}
htmlHorizontalLine();
printTrackHtml(tdb);