a9d79df3cbd3f62b8607f053db951ccc0b7647da max Thu Mar 26 05:15:35 2015 -0700 previous commit was way overzealous, re-adding stubs for old gisaid code. Should have not touched this, sorry. diff --git src/hg/hgc/virusClick.c src/hg/hgc/virusClick.c index 19e8616..53a6672 100644 --- src/hg/hgc/virusClick.c +++ src/hg/hgc/virusClick.c @@ -592,31 +592,31 @@ sqlFreeResult(&sr); hFreeConn(&conn); htmlHorizontalLine(); printf("

Protein Structure Analysis and Prediction

"); printf("3D Structure Prediction of consensus sequence (with variations of all selected sequences highlighted):"); printf("
PDB file:
"); char pdbUrl[PATH_LEN]; safef(pdbUrl, sizeof(pdbUrl), "%s/%s/decoys/%s.try1-opt3.pdb.gz", getH1n1StructUrl(), item, item); // Modeller stuff char modelPdbUrl[PATH_LEN]; if (getH1n1Model(gene, modelPdbUrl)) { - char *selectFile = cartOptionalString(cart, gisaidAaSeqList); + char *selectFile = cartOptionalString(cart, "gisaidTable.gisaidAaSeqList"); struct tempName imageFile, chimeraScript, chimerax; mkH1n1StructData(gene, selectFile, NULL, &imageFile, &chimeraScript); mkChimerax(gene, modelPdbUrl, chimeraScript.forCgi, &chimerax); printf("%s, view with Chimera
\n", modelPdbUrl, gene, chimerax.forHtml); printf("\n"); printf("\n"); printf("", imageFile.forHtml); printf("\n"); printf("
\n"); } htmlHorizontalLine(); printTrackHtml(tdb);