Commits for hiram

v313_base to v314_preview (2015-03-09 to 2015-03-16) v314

• revert temporary donnak email address back to ann refs #14887
  
  • src/utils/qa/weeklybld/buildEnv.csh - lines changed 1, context: html, text, full: html, text
  • src/utils/qa/weeklybld/doNewBranch.csh - lines changed 4, context: html, text, full: html, text
  • src/utils/qa/weeklybld/doNewReview.csh - lines changed 1, context: html, text, full: html, text
  • src/utils/qa/weeklybld/doNewReview2.csh - lines changed 1, context: html, text, full: html, text
• Added bisBis Bison bison bison refs #14560
  
  • src/hg/makeDb/genbank/src/lib/gbGenome.c - lines changed 2, context: html, text, full: html, text
• Added bisBis1; refs #14560
  
  • src/hg/makeDb/genbank/etc/genbank.conf - lines changed 23, context: html, text, full: html, text
• adding ornAna2 to the build refs #14560
  
  • src/hg/makeDb/trackDb/makefile - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/platypus/ornAna2/description.html - lines changed 63, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/platypus/ornAna2/gap.html - lines changed 30, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/platypus/ornAna2/gold.html - lines changed 34, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/platypus/ornAna2/trackDb.ra - lines changed 8, context: html, text, full: html, text
• add search rule for gold table refs #14560
  
  • src/hg/makeDb/trackDb/platypus/ornAna2/trackDb.ra - lines changed 5, context: html, text, full: html, text
• order by phylo distance from 4D estimates refs #14410
  
  • src/hg/makeDb/trackDb/tarsier/tarSyr2/trackDb.17way.ra - lines changed 1, context: html, text, full: html, text
• corrected phylo ordering from 4D calculation refs #14970
  
  • src/hg/makeDb/trackDb/human/hg38/trackDb.17way.ra - lines changed 2, context: html, text, full: html, text
• clarify usage message to avoid confusion refs #14955
  
  • src/hg/mouseStuff/axtChain/axtChain.c - lines changed 4, context: html, text, full: html, text
• fixup gold table search on frag names refs #14017
  
  • src/hg/makeDb/trackDb/zebrafish/danRer10/trackDb.ra - lines changed 5, context: html, text, full: html, text
• add fixup procedure for gold table frag name search rule in trackDb refs #14017
  
  • src/hg/makeDb/doc/danRer10/initialBuild.txt - lines changed 52, context: html, text, full: html, text
• clarify usage message to avoid confusion refs #14955
  
  • src/hg/mouseStuff/axtChain/axtChain.c - lines changed 1, context: html, text, full: html, text
• stray blank line caused settings to be missed refs #14970
  
  • src/hg/makeDb/trackDb/human/hg38/trackDb.17way.ra - lines changed 1, context: html, text, full: html, text
• fixup cgi encoding for getDna clicks from these items refs #9741
  
  • src/hg/hgc/rmskJoinedClick.c - lines changed 3, context: html, text, full: html, text
• adding xenTro7 rules refs #9868
  
  • src/hg/makeDb/schema/all.joiner - lines changed 12, context: html, text, full: html, text
• v314 preview1 refs #14887
  
  • src/utils/qa/weeklybld/buildEnv.csh - lines changed 2, context: html, text, full: html, text