0947dbe2e5166cdf0cbb42cb12ab13a757a10e91
hiram
  Wed Mar 18 10:13:41 2015 -0700
add some Rna utils to the userApps refs #14513

diff --git src/hg/makefile src/hg/makefile
index e0cd71b..6393d79 100644
--- src/hg/makefile
+++ src/hg/makefile
@@ -66,31 +66,34 @@
 	bedToGenePred \
 	blastToPsl \
 	checkCoverageGaps \
 	checkHgFindSpec \
 	checkTableCoords \
 	dbTrash \
 	encode3/validateFiles \
 	encode3/validateManifest \
 	estOrient \
 	featureBits \
 	genePredHisto \
 	genePredSingleCover \
 	genePredToBed \
 	genePredToFakePsl \
 	genePredToMafFrames \
+	getRna \
+	getRnaPred \
 	gigAssembler/checkAgpAndFa \
+	hgSpeciesRna \
 	hgsql \
 	hgsqldump \
 	maskOutFa \
 	mrnaToGene \
 	ratStuff/mafsInRegion \
 	ratStuff/mafSpeciesSubset \
 	ratStuff/mafToSnpBed \
 	pslCDnaFilter \
 	genePredCheck \
 	genePredToGtf \
 	pslCat \
 	pslCheck \
 	pslDropOverlap \
 	pslFilter \
 	pslHisto \
@@ -131,42 +134,39 @@
 	ctgToChromFa \
 	embossToPsl \
 	${buildRefresh} \
 	fakeFinContigs \
 	fakeOut \
 	ffaToFa \
 	fishClones \
 	fqToQa \
 	fqToQac \
 	fragPart \
 	gbGetEntries \
 	gbOneAcc \
 	gbToFaRa \
 	geneBounds \
 	getFeatDna \
-	getRna \
-	getRnaPred \
 	gpStats \
 	gpToGtf \
 	gpcrParser \
 	gsBig \
 	hgTablesTest \
 	hgChroms \
 	hgGetAnn \
 	hgKnownGeneList \
 	hgSelect \
-	hgSpeciesRna \
 	hgsqlLocal \
 	hgsqladmin \
 	hgsqldumpLocal \
 	hgsqlimport \
         hgsqlSwapTables \
         hgsqlTableDate \
 	intronEnds \
 	lib \
 	liftAcross \
 	liftAgp \
 	liftFrags \
 	lfsOverlap \
 	makeDb \
 	mdToNcbiLift \
 	mouseStuff \