7cc78b44d390e81b676d98e1fa54483466ba96f9
mspeir
  Fri Mar 20 09:17:01 2015 -0700
adding announcement for new RM Viz track, refs #9741

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 <!-- News Section ============================================- -->  
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                  <font size="4"><a name="TOC"></a><b>&nbsp; News</b></font><a href="http://www.twitter.com/GenomeBrowser" target="_blank"><img src="http://twitter-badges.s3.amazonaws.com/t_small-a.png" title="Follow &#64;GenomeBrowser on Twitter" alt="Follow &#64;GenomeBrowser on Twitter" style="vertical-align:text-bottom; margin-left: 15px;"></a>
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           <P>
           To receive announcements of new genome 
           assembly releases, new software features, updates and 
           training seminars by email, subscribe to the
           <A HREF="http://groups.google.com/a/soe.ucsc.edu/group/genome-announce?hl=en"
           TARGET=_blank>genome-announce</A> mailing list. Please see our
           <a href="http://genome.ucsc.edu/blog"
           target=_blank>blog</a> for posts about Genome Browser tools, features, projects and more.
           </p>
 
     <!-- start news -->
         <hr>
         <p>
+        <font face="courier" size="3"><b>17 March 2015 - New Visualization Option for RepeatMasker</b></font>
+        <p>
+	We are excited to announce the release of the new RepeatMasker Visualization track for the
+	hg38 and mm10 assemblies. This new RepeatMasker track displays detailed information that
+	includes the amount of unaligned repeat sequence and lines joining repeat fragments.
+	Additionally, repeats are now colored based on their repeat class. This new RepeatMasker
+	track incorporates a new details page that includes the detailed RepeatMasker output and
+	the raw alignment used to generate the final repeat annotation. You can read more about
+	this track on the description page for either
+	<a href="../cgi-bin/hgTrackUi?db=hg38&g=joinedRmsk">hg38</a> or
+	<a href="../cgi-bin/hgTrackUi?db=mm10&g=joinedRmsk">mm10</a>.
+	</p>
+
+	<p>
+	This track is the result of a collaboration between the
+	<a href="http://www.systemsbiology.org/" target="_blank">Insitute for Systems Biology</a>
+	and the UCSC Genome Browser. We would like to thank Robert Hubley, Arian Smit, Hiram
+	Clawson, and Matthew Speir for their efforts in creating this track.
+	</p>
+
+        <hr>
+        <p>
         <font face="courier" size="3"><b>03 March 2015 - Use UDR for Quick Sizable Downloads</b></font>
         <p>
         The UCSC Genome Browser is pleased to share a download protocol to use when downloading
         large sets of files from our download servers: <b>UDR (UDT Enabled Rsync)</b>. UDR utilizes rsync
         as the transport mechanism, but sends the data over the UDT protocol, which enables huge
         amounts of data to be downloaded efficiently over long distances.</p>
         <p>
         Protocols like http, ftp and rsync can have a problem in that the further
         away the download source is from the user, the slower the speed becomes. Protocols like UDT/UDR
         allow for many UDP packets to be sent in batch, thus allowing for much higher transmit speeds
         over long distances. UDR will be especially useful for users who are downloading from places
         that are far away from California. The US East Coast and the international community will likely
         see much higher download speeds by using UDR rather than rsync, http or ftp.
         <a href="goldenPath/newsarch.html#030315">Read more</a>.
         <hr>
-        <p>
-        <font face="courier" size="3"><b>26 February 2015 - New Training Video!</b></font>
-        <p>
-	Ever wondered how to find the tables associated with your favorite Browser track?
-	Find out how in our new training video. See our
-        <a href="training/index.html" target="_blank">training page</a>, our
-        <a href="http://bit.ly/genomebrowserYoutube" target="_blank">YouTube channel</a>, and our
-        <a href="http://genome.ucsc.edu/blog/introducing-the-genome-browser-youtube-channel/" target="_blank">blog</a> for details.
-        </p>
-
-        <hr>
 
         <!-- start archives -->
 <!--
+        <font face="courier" size="3"><b>17 March 2015 - New Visualization Option for RepeatMasker</b>: </font>
+	We are excited to announce the release of the new RepeatMasker Visualization track for the
+	hg38 and mm10 assemblies.
+        <a href="goldenPath/newsarch.html#032015">Read more</a>.
+
 	<font face="courier" size="3"><b>03 March 2015 - Use UDR for Quick Sizable Downloads</b>: </font>
-        <p>
         The UCSC Genome Browser is pleased to share a download protocol to use when downloading
         large sets of files from our download servers: <b>UDR (UDT Enabled Rsync)</b>. UDR utilizes rsync
         as the transport mechanism, but sends the data over the UDT protocol, which enables huge
         amounts of data to be downloaded efficiently over long distances.
         <a href="goldenPath/newsarch.html#030315">Read more</a>.
-
+--> 
 
         <p>
         <font face="courier" size="3"><b>26 February 2015 - New Training Video!</b>: </font>
         <p>
         View it now on our
         <a href="http://bit.ly/genomebrowserYoutube" target="_blank">YouTube channel</a>.
         <a href="goldenPath/newsarch.html#022615">Read more</a>.
---> 
 	<p>
         <font face="courier" size="3"><b>12 February 2015 - Blat Your Assembly Hub</b>: </font>
         Assembly data hubs, track hubs that allow researchers to annotate genomes that are
         not in the UCSC Genome Browser, can now use blat to quickly find DNA and protein
         sequences in their unique assemblies.
         <a href="goldenPath/newsarch.html#021215">Read more</a>.
 
-  <p>
-        <font face="courier" size="3"><b>11 February 2015 - dbSNP 142 Available for hg19 and hg38</b>: </font>
-        We are pleased to announce the release of four tracks derived from NCBI
-        <a href="http://www.ncbi.nlm.nih.gov/SNP/" target="_blank">dbSNP</a> Build 142
-        data, available on the two most recent human assemblies GRCh37/hg19 and GRCh38/hg38.
-        The new tracks contain a substantial amount of additional annotation data not 
-        included in previous dbSNP tracks, with corresponding coloring and filtering options 
-        in the Genome Browser.
-        <a href="goldenPath/newsarch.html#021115">Read more</a>.
-        </p>
-
-  <p>
-        <font face="courier" size="3"><b>2 February 2015 - Host a Genome Browser Workshop</b>: </font>
-        New timeslots are now available to host a Genome Browser workshop at your institution.
-        <a href="goldenPath/newsarch.html#020215">Read more</a>.
-        </p>
-
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