785731775908bbc9d7f0449772ca0f42a1e669fa
braney
  Fri Apr 17 07:48:25 2015 -0700
add a few new feature types to the processing of gff3ToGenePred (rRNA,
ncRNA, primary-transcript)

diff --git src/inc/gff3.h src/inc/gff3.h
index a047f14..f992df8 100644
--- src/inc/gff3.h
+++ src/inc/gff3.h
@@ -199,37 +199,40 @@
 /* standard attribute tags */
 extern char *gff3AttrID;
 extern char *gff3AttrName;
 extern char *gff3AttrAlias;
 extern char *gff3AttrParent;
 extern char *gff3AttrTarget;
 extern char *gff3AttrGap;
 extern char *gff3AttrDerivesFrom;
 extern char *gff3AttrNote;
 extern char *gff3AttrDbxref;
 extern char *gff3AttrOntologyTerm;
 
 /* commonly used features names */
 extern char *gff3FeatGene;
 extern char *gff3FeatMRna;
+extern char *gff3FeatNCRna;
+extern char *gff3FeatRRna;
 extern char *gff3FeatExon;
 extern char *gff3FeatCDS;
 extern char *gff3FeatThreePrimeUTR;
 extern char *gff3FeatFivePrimeUTR;
 extern char *gff3FeatStartCodon;
 extern char *gff3FeatStopCodon;
 extern char *gff3FeatTranscript;
+extern char *gff3FeatPrimaryTranscript;
 
 struct gff3File *gff3FileOpen(char *fileName, int maxErr, FILE *errFh);
 /* Parse a GFF3 file into a gff3File object.  If maxErr not zero, then
  * continue to parse until this number of error have been reached.  A maxErr
  * less than zero does not stop reports all errors. Write errors to errFh,
  * if NULL, use stderr. */
 
 void gff3FileFree(struct gff3File **g3fPtr);
 /* Free a gff3File object */
 
 struct gff3Ann *gff3FileFindAnn(struct gff3File *g3f, char *id);
 /* find an annotation record by id, or NULL if not found. */
 
 struct gff3Attr *gff3AnnFindAttr(struct gff3Ann *g3a, char *tag);
 /* find a user attribute, or NULL */