cd8540f3042b909432e4257588c13d9249e583f2
angie
Wed Apr 1 16:49:33 2015 -0700
hgTables fixes to support bigBed and VCF tracks that have no mysql table,
only a bigDataUrl setting that may point to a local file.
refs #15059
diff --git src/hg/hgTables/bigBed.c src/hg/hgTables/bigBed.c
index fcb21dd..32981e4 100644
--- src/hg/hgTables/bigBed.c
+++ src/hg/hgTables/bigBed.c
@@ -350,31 +350,31 @@
/* Figure out bigBed file name and open it. Get contents for first chromosome as an example. */
struct sqlConnection *conn = NULL;
if (!trackHubDatabase(database))
conn = hAllocConn(database);
char *fileName = bigBedFileName(table, conn);
struct bbiFile *bbi = bigBedFileOpen(fileName);
struct bbiChromInfo *chromList = bbiChromList(bbi);
struct lm *lm = lmInit(0);
struct bigBedInterval *ivList = getNElements(bbi, chromList, lm, 10);
/* Get description of columns, making it up from BED records if need be. */
struct asObject *as = bigBedAsOrDefault(bbi);
hPrintf("Database: %s", database);
hPrintf(" Primary Table: %s ", table);
-if (!(isHubTrack(table) || isCustomTrack(table)))
+if (sqlTableExists(conn, table))
{
char *date = firstWordInLine(sqlTableUpdate(conn, table));
if (date != NULL)
printf("  Data last updated: %s
\n", date);
}
hPrintf("Big Bed File: %s", fileName);
if (bbi->version >= 2)
{
hPrintf("
Item Count: ");
printLongWithCommas(stdout, bigBedItemCount(bbi));
}
hPrintf("
\n");
hPrintf("Format description: %s
", as->comment);
/* Put up table that describes fields. */