ec9d5ce9ea9bc12ffcb605ff23578028f5fc7d50 mspeir Thu Apr 2 15:13:38 2015 -0700 Standard release edits for tarSyr2, refs #14410 diff --git src/hg/htdocs/indexNews.html src/hg/htdocs/indexNews.html index b087951..ab9ec0d 100755 --- src/hg/htdocs/indexNews.html +++ src/hg/htdocs/indexNews.html @@ -25,30 +25,56 @@ <TR><TH HEIGHT=3></TH></TR> <TR><TD WIDTH=10></TD> <TD> <P> To receive announcements of new genome assembly releases, new software features, updates and training seminars by email, subscribe to the <A HREF="http://groups.google.com/a/soe.ucsc.edu/group/genome-announce?hl=en" TARGET=_blank>genome-announce</A> mailing list. Please see our <a href="http://genome.ucsc.edu/blog" target=_blank>blog</a> for posts about Genome Browser tools, features, projects and more. </p> <!-- start news --> <hr> + <p> + <font face="courier" size="3"><b>02 April 2015 - + New Tariser (tarSyr2) Assembly Now Available in the Genome Browser</b></font> + <p> + We are pleased to announce the release of a Genome Browser for the September 2013 + assembly of tarsier, <em>Tarsius syrichta</em> (WashU Tarsius_syrichta-2.0.1, + UCSC version tarSyr2). The whole genome shotgun assembly was provided by + <a href="http://genome.wustl.edu/genomes/detail/tarsius-syrichta/" + target="_blank">Washington University</a>. + There are 337,189 scaffolds with a total size of 3,453,864,774 bases. + </p> + <p> + Bulk downloads of the sequence and annotation data are available via the Genome + Browser + <a href="ftp://hgdownload.cse.ucsc.edu/goldenPath/tarSyr2/">FTP server</a> + or the + <a href="http://hgdownload.cse.ucsc.edu/downloads.html#tarsier">Downloads</a> + page. These data have + <a href="/goldenPath/credits.html#tarsier_credits">specific conditions for use</a>. + The tarsier (tarSyr2) browser annotation tracks were generated by UCSC and + collaborators worldwide. See the + <a href="/goldenPath/credits.html#tarsier_credits">Credits</a> page for a detailed + list of the organizations and individuals who contributed to this release. + </p> + + <hr> <font face="courier" size="3"><b>02 April 2015 - New Training Video!</b></font> <p> Going crazy counting amino acids? Learn an easier way to find the codon number in our new training video. See our <a href="../training/index.html" target="_blank">training page</a>, and our <a href="http://bit.ly/genomebrowserYoutube" target=_"blank">YouTube channel</a> for details. </p> <hr> <p> <font face="courier" size="3"><b>01 April 2015 - New GRCz10 Zebrafish Assembly Now Available</b></font> <p> The most recent zebrafish assembly -- GRCz10 (UCSC version danRer10, Sep. 2014) -- is now available in the UCSC Genome Browser. This is the first zebrafish release by the <a href="http://www.ncbi.nlm.nih.gov/projects/genome/assembly/grc/zebrafish/" target="_blank">Genome Reference Consortium</a>, who took over the improvement and @@ -71,47 +97,45 @@ The danRer10 sequence and annotation data can be downloaded from the UCSC Genome Browser <a href="ftp://hgdownload.cse.ucsc.edu/goldenPath/danRer10/">FTP server</a> or <a href="http://hgdownload.cse.ucsc.edu/downloads.html#zebrafish">downloads</a> page. </p> <p> We'd like to thank the Genome Reference Consortium for providing this assembly. The UCSC zebrafish Genome Browser was produced by Hiram Clawson, Brian Raney and Steve Heitner. See the <a href="../goldenPath/credits.html#zebrafish_credits">credits</a> page for a detailed list of the organizations and individuals who contributed to this release. <hr> <!-- start archives --> <!-- + <font face="courier" size="3"><b>02 April 2015 - + New Tarsier (tarSyr2) Assembly Now Available in the Genome Browser</b>: </font> + We are pleased to announce the release of a Genome Browser for the September 2013 + assembly of tarsier, <em>Tarsius syrichta</em> (WashU Tarsius_syrichta-2.0.1, + UCSC version tarSyr2). + <a href="goldenPath/newsarch.html#040215_2">Read more</a>. + </p> + <p> <font face="courier" size="3"><b><b>02 April 2015 - New Training Video!</b></font> - <p> View it now on our <a href="http://bit.ly/genomebrowserYoutube" target=_"blank">YouTube channel</a>. <a href="goldenPath/newsarch.html#040215">Read more</a>. </p> <font face="courier" size="3"><b>01 April 2015 - New GRCz10 Zebrafish Assembly Now Available</b>: </font> The most recent zebrafish assembly -- GRCz10 (UCSC version danRer10, Sep. 2014) -- is now available in the UCSC Genome Browser. <a href="goldenPath/newsarch.html#040115">Read more</a>. --> <font face="courier" size="3"><b>20 March 2015 - New Visualization Option for RepeatMasker</b>: </font> We are excited to announce the release of the new RepeatMasker Visualization track for the hg38 and mm10 assemblies. <a href="goldenPath/newsarch.html#032015">Read more</a>. - <p> - <font face="courier" size="3"><b>03 March 2015 - Use UDR for Quick Sizable Downloads</b>: </font> - The UCSC Genome Browser is pleased to share a download protocol to use when downloading - large sets of files from our download servers: <b>UDR (UDT Enabled Rsync)</b>. UDR utilizes rsync - as the transport mechanism, but sends the data over the UDT protocol, which enables huge - amounts of data to be downloaded efficiently over long distances. - <a href="goldenPath/newsarch.html#030315">Read more</a>. - - </TD><TD WIDTH=15> </TD></TR></TABLE> <BR></TD></TR></TABLE> </TD></TR></TABLE>