ec9d5ce9ea9bc12ffcb605ff23578028f5fc7d50
mspeir
  Thu Apr 2 15:13:38 2015 -0700
Standard release edits for tarSyr2, refs #14410

diff --git src/hg/htdocs/indexNews.html src/hg/htdocs/indexNews.html
index b087951..ab9ec0d 100755
--- src/hg/htdocs/indexNews.html
+++ src/hg/htdocs/indexNews.html
@@ -1,117 +1,141 @@
 <!-- News Section ============================================- -->  
 <TABLE WIDTH="100%" BGCOLOR="#888888" BORDER="0" CELLSPACING="0" CELLPADDING="1">
     <TR><TD>        
     <TABLE BGCOLOR="#fffee8" WIDTH="100%"  BORDER="0" CELLSPACING="0" CELLPADDING="0">
         <TR><TD>        
         <TABLE BGCOLOR="#D9E4F8" BACKGROUND="images/hr.gif" WIDTH="100%" BORDER=0>
             <TR><TD>
             <!--cheap trick to get background on row to be continuous-->
             <TABLE CELLPADDING=0 CELLSPACING=0 WIDTH="100%">
                 <TR><TD ALIGN="left">
                  <font size="4"><a name="TOC"></a><b>&nbsp; News</b></font><a href="http://www.twitter.com/GenomeBrowser" target="_blank"><img src="http://twitter-badges.s3.amazonaws.com/t_small-a.png" title="Follow &#64;GenomeBrowser on Twitter" alt="Follow &#64;GenomeBrowser on Twitter" style="vertical-align:text-bottom; margin-left: 15px;"></a>
                  <a title="Genome Browser Facebook page"
                  href="http://www.facebook.com/ucscGenomeBrowser"
                  target="_blank"><img
                  src="/images/FB-f-Logo__blue_22.jpg"
                  style="vertical-align:text-bottom; margin-left: 15px;"
                  alt="Genome Browser Facebook page"></a>
                  <a href="https://plus.google.com/107643636314131661344" rel="publisher"></a>
                </TD>
                 <TD ALIGN="right"><A HREF="goldenPath/newsarch.html"><IMG 
                 SRC="images/news.jpg" ALT="" ALIGN="right" BORDER=0></A>
             </TD></TR></TABLE>
         </TD></TR></TABLE>
         <TABLE BGCOLOR="#fffee8" WIDTH="100%" CELLPADDING=0>
           <TR><TH HEIGHT=3></TH></TR>
           <TR><TD WIDTH=10></TD>
           <TD>
           <P>
           To receive announcements of new genome 
           assembly releases, new software features, updates and 
           training seminars by email, subscribe to the
           <A HREF="http://groups.google.com/a/soe.ucsc.edu/group/genome-announce?hl=en"
           TARGET=_blank>genome-announce</A> mailing list. Please see our
           <a href="http://genome.ucsc.edu/blog"
           target=_blank>blog</a> for posts about Genome Browser tools, features, projects and more.
           </p>
 
     <!-- start news -->
 	<hr>
+	<p>
+	<font face="courier" size="3"><b>02 April 2015 -
+	New Tariser (tarSyr2) Assembly Now Available in the Genome Browser</b></font>
+	<p>
+	We are pleased to announce the release of a Genome Browser for the September 2013
+	assembly of tarsier, <em>Tarsius syrichta</em> (WashU Tarsius_syrichta-2.0.1,
+	UCSC version tarSyr2). The whole genome shotgun assembly was provided by
+	<a href="http://genome.wustl.edu/genomes/detail/tarsius-syrichta/"
+	target="_blank">Washington University</a>.
+	There are 337,189 scaffolds with a total size of 3,453,864,774 bases.
+	</p>   
+	<p>
+	Bulk downloads of the sequence and annotation data are available via the Genome
+	Browser
+	<a href="ftp://hgdownload.cse.ucsc.edu/goldenPath/tarSyr2/">FTP server</a>
+	or the
+	<a href="http://hgdownload.cse.ucsc.edu/downloads.html#tarsier">Downloads</a>
+	page. These data have
+	<a href="/goldenPath/credits.html#tarsier_credits">specific conditions for use</a>.
+	The tarsier (tarSyr2) browser annotation tracks were generated by UCSC and
+	collaborators worldwide. See the
+	<a href="/goldenPath/credits.html#tarsier_credits">Credits</a> page for a detailed
+	list of the organizations and individuals who contributed to this release.
+	</p>
+
+        <hr>
         <font face="courier" size="3"><b>02 April 2015 - New Training Video!</b></font>
         <p>
         Going crazy counting amino acids? Learn an easier way to find the codon number in our new training video. See our
         <a href="../training/index.html" target="_blank">training page</a>, and our
         <a href="http://bit.ly/genomebrowserYoutube" target=_"blank">YouTube channel</a> for details.
         </p>
 
         <hr>
         <p>
         <font face="courier" size="3"><b>01 April 2015 - New GRCz10 Zebrafish Assembly Now Available</b></font>
         <p>
         The most recent zebrafish assembly -- GRCz10 (UCSC version danRer10, Sep. 2014) -- is now
         available in the UCSC Genome Browser. This is the first zebrafish release by the
         <a href="http://www.ncbi.nlm.nih.gov/projects/genome/assembly/grc/zebrafish/"
          target="_blank">Genome Reference Consortium</a>, who took over the improvement and
         maintenance of the zebrafish genome assembly.
         </p>
 
         <p>
         The GRCz10 assembly improves upon Zv9 by utilizing optical mapping and additional meiotic
         mapping to fill gaps with new clone sequence and improve the positioning of assembly
         components.  This has also been supplemented with a new whole genome shotgun assembly
         WGS31. The result is an assembly with a sequence length of 1.3 Gb in 26 chromosomes and
         1,035 scaffolds.  For more details about the GRCz10 assembly, see the
         <a href="http://www.ncbi.nlm.nih.gov/assembly/210611"
          target="_blank">GRCz10 assembly page</a> or the official
         <a href="http://www.ncbi.nlm.nih.gov/news/10-08-2014-zebrafish-grcz10-annotated/"
          target="_blank">GRCz10 announcement</a>.
         </p>
 
         <p>
         The danRer10 sequence and annotation data can be downloaded from the UCSC Genome Browser
         <a href="ftp://hgdownload.cse.ucsc.edu/goldenPath/danRer10/">FTP server</a> or
         <a href="http://hgdownload.cse.ucsc.edu/downloads.html#zebrafish">downloads</a> page.
         </p>
 
         <p>
         We'd like to thank the Genome Reference Consortium for providing this assembly. The UCSC
         zebrafish Genome Browser was produced by Hiram Clawson, Brian Raney and Steve Heitner. See the
         <a href="../goldenPath/credits.html#zebrafish_credits">credits</a> page for a detailed list
         of the organizations and individuals who contributed to this release.
 
         <hr>
 
         <!-- start archives -->
 <!--
+	<font face="courier" size="3"><b>02 April 2015 -
+        New Tarsier (tarSyr2) Assembly Now Available in the Genome Browser</b>: </font>
+        We are pleased to announce the release of a Genome Browser for the September 2013
+        assembly of tarsier, <em>Tarsius syrichta</em> (WashU Tarsius_syrichta-2.0.1,
+        UCSC version tarSyr2).
+	<a href="goldenPath/newsarch.html#040215_2">Read more</a>.
+	</p>
+
         <p>
         <font face="courier" size="3"><b><b>02 April 2015 - New Training Video!</b></font>
-        <p>
         View it now on our
         <a href="http://bit.ly/genomebrowserYoutube" target=_"blank">YouTube channel</a>.
         <a href="goldenPath/newsarch.html#040215">Read more</a>.
         </p>
 
         <font face="courier" size="3"><b>01 April 2015 - New GRCz10 Zebrafish Assembly Now Available</b>: </font>
         The most recent zebrafish assembly -- GRCz10 (UCSC version danRer10, Sep. 2014) -- is now
         available in the UCSC Genome Browser.
         <a href="goldenPath/newsarch.html#040115">Read more</a>.
 --> 
 
         <font face="courier" size="3"><b>20 March 2015 - New Visualization Option for RepeatMasker</b>: </font>
 	We are excited to announce the release of the new RepeatMasker Visualization track for the
 	hg38 and mm10 assemblies.
         <a href="goldenPath/newsarch.html#032015">Read more</a>.
 
-        <p>
-	<font face="courier" size="3"><b>03 March 2015 - Use UDR for Quick Sizable Downloads</b>: </font>
-        The UCSC Genome Browser is pleased to share a download protocol to use when downloading
-        large sets of files from our download servers: <b>UDR (UDT Enabled Rsync)</b>. UDR utilizes rsync
-        as the transport mechanism, but sends the data over the UDT protocol, which enables huge
-        amounts of data to be downloaded efficiently over long distances.
-        <a href="goldenPath/newsarch.html#030315">Read more</a>.
-
-
             </TD><TD WIDTH=15>
          </TD></TR></TABLE>
     <BR></TD></TR></TABLE>
 </TD></TR></TABLE>