24686a84ab604327335654c896be84074b83cbe6 pauline Thu Apr 2 10:17:24 2015 -0700 Adding announcement for new training video. refs#13969 diff --git src/hg/htdocs/indexNews.html src/hg/htdocs/indexNews.html index 9c5843d..b087951 100755 --- src/hg/htdocs/indexNews.html +++ src/hg/htdocs/indexNews.html @@ -1,129 +1,117 @@ <!-- News Section ============================================- --> <TABLE WIDTH="100%" BGCOLOR="#888888" BORDER="0" CELLSPACING="0" CELLPADDING="1"> <TR><TD> <TABLE BGCOLOR="#fffee8" WIDTH="100%" BORDER="0" CELLSPACING="0" CELLPADDING="0"> <TR><TD> <TABLE BGCOLOR="#D9E4F8" BACKGROUND="images/hr.gif" WIDTH="100%" BORDER=0> <TR><TD> <!--cheap trick to get background on row to be continuous--> <TABLE CELLPADDING=0 CELLSPACING=0 WIDTH="100%"> <TR><TD ALIGN="left"> <font size="4"><a name="TOC"></a><b> News</b></font><a href="http://www.twitter.com/GenomeBrowser" target="_blank"><img src="http://twitter-badges.s3.amazonaws.com/t_small-a.png" title="Follow @GenomeBrowser on Twitter" alt="Follow @GenomeBrowser on Twitter" style="vertical-align:text-bottom; margin-left: 15px;"></a> <a title="Genome Browser Facebook page" href="http://www.facebook.com/ucscGenomeBrowser" target="_blank"><img src="/images/FB-f-Logo__blue_22.jpg" style="vertical-align:text-bottom; margin-left: 15px;" alt="Genome Browser Facebook page"></a> <a href="https://plus.google.com/107643636314131661344" rel="publisher"></a> </TD> <TD ALIGN="right"><A HREF="goldenPath/newsarch.html"><IMG SRC="images/news.jpg" ALT="" ALIGN="right" BORDER=0></A> </TD></TR></TABLE> </TD></TR></TABLE> <TABLE BGCOLOR="#fffee8" WIDTH="100%" CELLPADDING=0> <TR><TH HEIGHT=3></TH></TR> <TR><TD WIDTH=10></TD> <TD> <P> To receive announcements of new genome assembly releases, new software features, updates and training seminars by email, subscribe to the <A HREF="http://groups.google.com/a/soe.ucsc.edu/group/genome-announce?hl=en" TARGET=_blank>genome-announce</A> mailing list. Please see our <a href="http://genome.ucsc.edu/blog" target=_blank>blog</a> for posts about Genome Browser tools, features, projects and more. </p> <!-- start news --> <hr> + <font face="courier" size="3"><b>02 April 2015 - New Training Video!</b></font> + <p> + Going crazy counting amino acids? Learn an easier way to find the codon number in our new training video. See our + <a href="../training/index.html" target="_blank">training page</a>, and our + <a href="http://bit.ly/genomebrowserYoutube" target=_"blank">YouTube channel</a> for details. + </p> + + <hr> <p> <font face="courier" size="3"><b>01 April 2015 - New GRCz10 Zebrafish Assembly Now Available</b></font> <p> The most recent zebrafish assembly -- GRCz10 (UCSC version danRer10, Sep. 2014) -- is now available in the UCSC Genome Browser. This is the first zebrafish release by the <a href="http://www.ncbi.nlm.nih.gov/projects/genome/assembly/grc/zebrafish/" target="_blank">Genome Reference Consortium</a>, who took over the improvement and maintenance of the zebrafish genome assembly. </p> <p> The GRCz10 assembly improves upon Zv9 by utilizing optical mapping and additional meiotic mapping to fill gaps with new clone sequence and improve the positioning of assembly components. This has also been supplemented with a new whole genome shotgun assembly WGS31. The result is an assembly with a sequence length of 1.3 Gb in 26 chromosomes and 1,035 scaffolds. For more details about the GRCz10 assembly, see the <a href="http://www.ncbi.nlm.nih.gov/assembly/210611" target="_blank">GRCz10 assembly page</a> or the official <a href="http://www.ncbi.nlm.nih.gov/news/10-08-2014-zebrafish-grcz10-annotated/" target="_blank">GRCz10 announcement</a>. </p> <p> The danRer10 sequence and annotation data can be downloaded from the UCSC Genome Browser <a href="ftp://hgdownload.cse.ucsc.edu/goldenPath/danRer10/">FTP server</a> or <a href="http://hgdownload.cse.ucsc.edu/downloads.html#zebrafish">downloads</a> page. </p> <p> We'd like to thank the Genome Reference Consortium for providing this assembly. The UCSC zebrafish Genome Browser was produced by Hiram Clawson, Brian Raney and Steve Heitner. See the <a href="../goldenPath/credits.html#zebrafish_credits">credits</a> page for a detailed list of the organizations and individuals who contributed to this release. - </p> <hr> - <p> - <font face="courier" size="3"><b>20 March 2015 - New Visualization Option for RepeatMasker</b></font> - <p> - We are excited to announce the release of the new RepeatMasker Visualization track for the - hg38 and mm10 assemblies. This new RepeatMasker track displays detailed information that - includes the amount of unaligned repeat sequence and lines joining repeat fragments. - Additionally, repeats are now colored based on their repeat class. This new RepeatMasker - track incorporates a new details page that includes the detailed RepeatMasker output and - the raw alignment used to generate the final repeat annotation. You can read more about - this track on the description page for either - <a href="../cgi-bin/hgTrackUi?db=hg38&g=rmskJoinedBaseline">hg38</a> or - <a href="../cgi-bin/hgTrackUi?db=mm10&g=rmskJoinedBaseline">mm10</a>. - </p> + <!-- start archives --> +<!-- <p> - This track is the result of a collaboration between the - <a href="http://www.systemsbiology.org/" target="_blank">Institute for Systems Biology</a> - and the UCSC Genome Browser. We would like to thank Robert Hubley, Arian Smit, Hiram - Clawson, and Matthew Speir for their efforts in creating this track. + <font face="courier" size="3"><b><b>02 April 2015 - New Training Video!</b></font> + <p> + View it now on our + <a href="http://bit.ly/genomebrowserYoutube" target=_"blank">YouTube channel</a>. + <a href="goldenPath/newsarch.html#040215">Read more</a>. </p> - <hr> - - <!-- start archives --> -<!-- <font face="courier" size="3"><b>01 April 2015 - New GRCz10 Zebrafish Assembly Now Available</b>: </font> The most recent zebrafish assembly -- GRCz10 (UCSC version danRer10, Sep. 2014) -- is now available in the UCSC Genome Browser. <a href="goldenPath/newsarch.html#040115">Read more</a>. +--> <font face="courier" size="3"><b>20 March 2015 - New Visualization Option for RepeatMasker</b>: </font> We are excited to announce the release of the new RepeatMasker Visualization track for the hg38 and mm10 assemblies. <a href="goldenPath/newsarch.html#032015">Read more</a>. ---> <p> <font face="courier" size="3"><b>03 March 2015 - Use UDR for Quick Sizable Downloads</b>: </font> The UCSC Genome Browser is pleased to share a download protocol to use when downloading large sets of files from our download servers: <b>UDR (UDT Enabled Rsync)</b>. UDR utilizes rsync as the transport mechanism, but sends the data over the UDT protocol, which enables huge amounts of data to be downloaded efficiently over long distances. <a href="goldenPath/newsarch.html#030315">Read more</a>. - <p> - <font face="courier" size="3"><b>26 February 2015 - New Training Video!</b></font> - View it now on our - <a href="http://bit.ly/genomebrowserYoutube" target="_blank">YouTube channel</a>. - <a href="goldenPath/newsarch.html#022615">Read more</a>. </TD><TD WIDTH=15> </TD></TR></TABLE> <BR></TD></TR></TABLE> </TD></TR></TABLE>