Commits for braney

v315_base to v316_preview (2015-04-20 to 2015-04-27) v316

• don't output peptides in getRnaPred.c if it's non-coding refs #14639
  
  • src/hg/getRnaPred/getRnaPred.c - lines changed 3, context: html, text, full: html, text
• cahnges to browser to support Gencode KnownGene #14639
  
  • src/hg/hgGene/hgGene.c - lines changed 11, context: html, text, full: html, text
  • src/hg/hgTracks/simpleTracks.c - lines changed 3, context: html, text, full: html, text
• make txToBedGraph a little more tolerant #14639
  
  • src/hg/txGraph/txBedToGraph/makeGraph.c - lines changed 3, context: html, text, full: html, text
• more work on makeGencodeKnownGene which builds knownGene, and kgXref,
  and some other tables #14639
  
  • src/hg/makeDb/makeGencodeKnownGene/makeGencodeKnownGene.c - lines changed 113, context: html, text, full: html, text
• trackDb changes to switch to Gencode UCSC Genes on hg38 refs #14639
  
  • src/hg/makeDb/trackDb/human/hg38/defaultPriority.ra - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/knownGene.ra.alpha - lines changed 19, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/knownGene.ra.beta - lines changed 18, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/trackDb.ra - lines changed 2, context: html, text, full: html, text
• add isGencode to acceptable tagTypes. refs #14639
  
  • src/hg/makeDb/trackDb/tagTypes.tab - lines changed 1, context: html, text, full: html, text