Commits for hiram

v315_base to v316_preview (2015-04-20 to 2015-04-27) v316

• wrapping up patch3 build refs #15413
  
  • src/hg/makeDb/doc/hg38/hg38Patch3.txt - lines changed 90, context: html, text, full: html, text
• adding description page for hg38Patch3 refs #15413
  
  • src/hg/makeDb/trackDb/human/hg38/hg38Patch3.html - lines changed 236, context: html, text, full: html, text
• trying bosTau7 in a beta public tag refs #11681
  
  • src/hg/makeDb/trackDb/human/chainNetBosTau7.ra - lines changed 17, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/chainNetPlacental.ra - lines changed 15, context: html, text, full: html, text
• new version 66 of lastz outputs lav records with zero length, ignore them refs #12502
  
  • src/hg/mouseStuff/lavToPsl/lavToPsl.c - lines changed 6, context: html, text, full: html, text
• rerunning old lastz runs mm10 canFam3 rheMac3 to fix problems and new run for tupBel1 and rerunning some others to get better coverage with default parameters refs #15144
  
  • src/hg/makeDb/doc/hg38/lastzRuns.txt - lines changed 464, context: html, text, full: html, text
• done with 17-way then upgraded to 20-way refs #14970
  
  • src/hg/makeDb/doc/hg38/multiz17way.txt - lines changed 270, context: html, text, full: html, text
• used to construct the description page for patch release 3 refs #15413
  
  • src/hg/makeDb/doc/hg38/patchDescr.pl - lines changed 164, context: html, text, full: html, text
• show comparison tree length estimates between this 20-way and the hg38 reference 20-way refs #15112
  
  • src/hg/makeDb/doc/tarSyr2/multiz20way.txt - lines changed 36, context: html, text, full: html, text
• v316 preview1
  
  • src/utils/qa/weeklybld/buildEnv.csh - lines changed 2, context: html, text, full: html, text