aee624ca913fe7b58e955d576a45763acdb05c08 angie Thu Apr 30 12:01:06 2015 -0700 Use the right autoSql for annoStreamDbFactorSource (with cellType and treatment columns) so those extra columns can be selected/deselected from output. refs #14579 diff --git src/hg/lib/hAnno.c src/hg/lib/hAnno.c index ffc6016..e857a79 100644 --- src/hg/lib/hAnno.c +++ src/hg/lib/hAnno.c @@ -281,30 +281,34 @@ // BED with no + fields; parse bed field count out of type line. int bedFieldCount = 3; char typeCopy[PATH_LEN]; safecpy(typeCopy, sizeof(typeCopy), tdb->type); char *words[8]; int wordCount = chopLine(typeCopy, words); if (wordCount > 1) bedFieldCount = atoi(words[1]); asObj = asParseText(bedAsDef(bedFieldCount, bedFieldCount)); } else if (sameString(tdb->track, "knownGene")) { if (hTableExists(db, "knownGene") && hTableExists(db, "kgXref")) asObj = annoStreamDbKnownGeneAsObj(); } +else if (sameString("factorSource", tdb->type)) + { + asObj = annoStreamDbFactorSourceAsObj(); + } return asObj; } struct asObject *hAnnoGetAutoSqlForTdb(char *db, char *chrom, struct trackDb *tdb) /* If possible, return the asObj that a streamer for this track would use, otherwise NULL. */ { struct asObject *asObj = getAutoSqlForType(db, chrom, tdb); if (!asObj && !isHubTrack(tdb->track)) { // If none of the above, it must be a database table; deduce autoSql from sql fields. char *dataDb = db, *dbTable = tdb->table; if (isCustomTrack(tdb->track)) { dbTable = trackDbSetting(tdb, "dbTableName");