f2c6220dbc628901a036253331e7b2d8b920750d
mspeir
  Thu May 28 10:35:03 2015 -0700
Adding announcement for new mm10 UCSC Genes track, refs #15145

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           <TR><TD WIDTH=10></TD>
           <TD>
           <P>
           To receive announcements of new genome 
           assembly releases, new software features, updates and 
           training seminars by email, subscribe to the
           <A HREF="http://groups.google.com/a/soe.ucsc.edu/group/genome-announce?hl=en"
           TARGET=_blank>genome-announce</A> mailing list. Please see our
           <a href="http://genome.ucsc.edu/blog"
           target=_blank>blog</a> for posts about Genome Browser tools, features, projects and more.
           </p>
 
     <!-- start news -->
 	<hr>
         <p>
+        <font face="courier" size="3"><b>28 May 2015 -
+        New UCSC Genes Track Released for GRCm38/mm10</b></font>
+        <p>
+        We're happy to announce the release of an updated UCSC Genes track for the GRCm38/mm10
+        mouse Genome Browser. The new release has 63,244 total transcripts, compared with 61,642
+        in the previous version. The total number of canonical genes has increased from 32,958
+        to 32,408. Comparing the new gene set with the previous version:
+        <ul>
+          <li>59,119 transcripts did not change between versions.</li>
+          <li>55 transcripts were not carried forward to the new version.</li>
+          <li>2,308 transcripts are &quot;compatible&quot; with those in the previous set, meaning
+              that the two transcripts show consistent splicing.  In most cases, the old and new
+              transcripts differ in the lengths of their UTRs.</li>
+          <li>160 transcripts overlap with those in the previous set, but do not show consistent
+              splicing (i.e., they contain overlapping introns with differing splice sites).</li>
+        </ul>
+        </p>
+        <p>
+        More details about the new UCSC Genes track can be found on the
+        <a href="/cgi-bin/hgTrackUi?db=mm10&g=knownGene">UCSC Genes track
+        description page</a>.
+        </p>
+
+        <p>
+        Many thanks to Brian Raney and Matthew Speir for their work on this track!
+        </p>
+
+	<hr>
+	<p>
 	<font face="courier" size="3"><b>15 May 2015 -
         Work for Us! New Job Openings on the UCSC Genome Browser Project</b></font>
         <p>
 	The UCSC Genome Browser project team is looking for two talented people to join our
 	engineering staff based in Santa Cruz, CA.</p>
 	<p>
 	The Software Engineer will work with a small engineering team to support and extend
 	the UCSC Genome Browser database and software, while interfacing with Genome Browser
 	collaborators and users worldwide. Our engineering work requires solid experience
 	with C, UNIX and SQL. For application information and more details, see 
 	<a href="https://jobs.ucsc.edu/applicants/Central?quickFind=68100"
 	target="_blank">Job #150568</a> on the UCSC staff employment page. </p>
 	<p>
   	The Quality and User Support Analyst will work with a small QA group that interacts closely 
 	with browser software developers and genomics researchers throughout the world. As
 	a member of the QA team, you will participate in all aspects of quality assurance for 
 	genomics projects staffed by our group and provide technical support for the affiliated 
 	user communities. For application information and more details about the position,
 	see <a href="https://jobs.ucsc.edu/applicants/Central?quickFind=68101"
 	target="_blank">Job #1505685</a> on the UCSC staff employment page. </p>
      	<p>
 	If you'd like to apply for one of these positions, be sure to submit your
 	application materials by May 25, 2015, for maximum consideration.
 	</p>
 
         <hr>
 
         <!-- start archives -->
 <!--
 	<p>
+        <font face="courier" size="3"><b>28 May 2015 -
+        New UCSC Genes Track Released for GRCm38/mm10</b>: </font>
+        We're happy to announce the release of an updated UCSC Genes track for the GRCm38/mm10
+        mouse Genome Browser.
+	<a href="goldenPath/newsarch.html#052815">Read more</a>.
+	</p>
+
+	<p>
 	<font face="courier" size="3"><b>15 May 2015 -
         Work for Us! New Job Openings on the UCSC Genome Browser Project: </b></font>
 	The UCSC Genome Browser project team is looking for two talented people to join our
 	engineering staff based in Santa Cruz, CA.
 	<a href="goldenPath/newsarch.html#051515">Read more</a>. 
 	</p>
 -->
 	<p>
 	<font face="courier" size="3"><b>08 April 2015 -
         bigGenePred Format Now Supported in the Genome Browser</b>: </font>
         We are pleased to announce that the UCSC Genome Browser now supports data in
         bigGenePred format.
 	<a href="goldenPath/newsarch.html#040815">Read more</a>.
         </p>
 	<p>