File Changes for hiram

v316_base to v317_preview (2015-05-11 to 2015-05-18) v317

• src/hg/makeDb/doc/hg38/multiz100way.txt
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    done with downloads and everything in the pushQ 007537 refs #14560
    
• src/hg/makeDb/trackDb/human/hg38/cons100way.html
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    update to correct newer assemblies refs #14560
    
• src/hg/makeDb/trackDb/human/hg38/cons20way.html
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    tweaking documentation refs #14970
    
• src/hg/makeDb/trackDb/human/hg38/trackDb.100way.ra
  • lines changed 3, context: html, text, full: html, text
    turning on frames and correct name for phyloP track refs #14560
    
• src/hg/makeDb/trackDb/human/hg38/trackDb.20way.ra
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    tweaking documentation refs #14970
    
• src/hg/makeDb/trackDb/trackDb.ra
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    turning on augustusGene track refs #13088
    
• src/hg/utils/automation/doAugustus.pl
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    beginning of augustus gene prediction procedure refs #13088
    
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    now running through cleanup refs #13088
    
  • lines changed 1, context: html, text, full: html, text
    now running through cleanup refs #13088
    
  • lines changed 2, context: html, text, full: html, text
    now running through cleanup refs #13088
    
  • lines changed 15, context: html, text, full: html, text
    fixup chicken mis reference and add production of rna fasta and protein fasta refs #13088
    
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    use the gp file instead of the database table for the getRnaPred conversions does not always work with the db table refs #13088
    
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    better batch building fasta and sizing kluster run and gzip result before moving around refs #13088
    
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    fixing process error procedure refs #13088
    
• src/hg/utils/automation/doBlastzChainNet.pl
  • lines changed 15, context: html, text, full: html, text
    correct README comments for syntenic nets and reciprocal best download files refs #15144
    
• src/hg/utils/automation/doRecipBest.pl
  • lines changed 15, context: html, text, full: html, text
    correct README comments for syntenic nets and reciprocal best download files refs #15144
    
• src/hg/utils/automation/makefile
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    adding doAugustus.pl doCpgIslands.pl and doGenscan.pl to the delivered script files list refs #13088
    
• src/utils/qa/weeklybld/buildEnv.csh
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    v317 preview1 refs #15355