dc23932b2dae91522d130c311ae3b28dbce488e6
braney
  Fri May 22 13:54:01 2015 -0700
add NCBI metadata to NCBI RefSeq track ( refs# 13673)

diff --git src/hg/inc/ncbiRefLink.h src/hg/inc/ncbiRefLink.h
new file mode 100644
index 0000000..20ff76b
--- /dev/null
+++ src/hg/inc/ncbiRefLink.h
@@ -0,0 +1,67 @@
+/* ncbiRefLink.h was originally generated by the autoSql program, which also 
+ * generated ncbiRefLink.c and ncbiRefLink.sql.  This header links the database and
+ * the RAM representation of objects. */
+
+#ifndef NCBIREFLINK_H
+#define NCBIREFLINK_H
+
+#define NCBIREFLINK_NUM_COLS 5
+
+extern char *ncbiRefLinkCommaSepFieldNames;
+
+struct ncbiRefLink
+/* Metadata for NCBI RefSeq Genes */
+    {
+    struct ncbiRefLink *next;  /* Next in singly linked list. */
+    char *id;	/* transcript id */
+    char *gbKey;	/* molecule type */
+    char *gene;	/* gene name */
+    char *dbXref;	/* database cross reference */
+    char *product;	/* product */
+    };
+
+void ncbiRefLinkStaticLoad(char **row, struct ncbiRefLink *ret);
+/* Load a row from ncbiRefLink table into ret.  The contents of ret will
+ * be replaced at the next call to this function. */
+
+struct ncbiRefLink *ncbiRefLinkLoad(char **row);
+/* Load a ncbiRefLink from row fetched with select * from ncbiRefLink
+ * from database.  Dispose of this with ncbiRefLinkFree(). */
+
+struct ncbiRefLink *ncbiRefLinkLoadAll(char *fileName);
+/* Load all ncbiRefLink from whitespace-separated file.
+ * Dispose of this with ncbiRefLinkFreeList(). */
+
+struct ncbiRefLink *ncbiRefLinkLoadAllByChar(char *fileName, char chopper);
+/* Load all ncbiRefLink from chopper separated file.
+ * Dispose of this with ncbiRefLinkFreeList(). */
+
+#define ncbiRefLinkLoadAllByTab(a) ncbiRefLinkLoadAllByChar(a, '\t');
+/* Load all ncbiRefLink from tab separated file.
+ * Dispose of this with ncbiRefLinkFreeList(). */
+
+struct ncbiRefLink *ncbiRefLinkCommaIn(char **pS, struct ncbiRefLink *ret);
+/* Create a ncbiRefLink out of a comma separated string. 
+ * This will fill in ret if non-null, otherwise will
+ * return a new ncbiRefLink */
+
+void ncbiRefLinkFree(struct ncbiRefLink **pEl);
+/* Free a single dynamically allocated ncbiRefLink such as created
+ * with ncbiRefLinkLoad(). */
+
+void ncbiRefLinkFreeList(struct ncbiRefLink **pList);
+/* Free a list of dynamically allocated ncbiRefLink's */
+
+void ncbiRefLinkOutput(struct ncbiRefLink *el, FILE *f, char sep, char lastSep);
+/* Print out ncbiRefLink.  Separate fields with sep. Follow last field with lastSep. */
+
+#define ncbiRefLinkTabOut(el,f) ncbiRefLinkOutput(el,f,'\t','\n');
+/* Print out ncbiRefLink as a line in a tab-separated file. */
+
+#define ncbiRefLinkCommaOut(el,f) ncbiRefLinkOutput(el,f,',',',');
+/* Print out ncbiRefLink as a comma separated list including final comma. */
+
+/* -------------------------------- End autoSql Generated Code -------------------------------- */
+
+#endif /* NCBIREFLINK_H */
+