34b15724b116043d2e5c6b25817caeeef5bbe3ec jcasper Mon May 18 11:01:42 2015 -0700 A few recent changes to dev's hg.conf diff --git confs/hgwdev.hg.conf confs/hgwdev.hg.conf index d286bad..de6bacc 100644 --- confs/hgwdev.hg.conf +++ confs/hgwdev.hg.conf @@ -36,30 +36,34 @@ # when localhost is used, MySQL may connect via shared memory # connections and not via TCP/IP socket ports # if you want a different default species selection on the Gateway # page, change this default Human to one of the genomes from the # defaultDb table in hgcentral: # hgsql -e "select genome from defaultDb;" hgcentral # If you need a different version of that specific genome, change # the defaultDb table entry, for example, a different mouse genome # version as default: # hgsql -e 'update defaultDb set name="mm8" where genome="Mouse" # then this defaultGenome would read: defaultGenome=Mouse # #defaultGenome=Human +# tracks display width has a default maximum width of 5000 pixels +# override that limit with a larger number for maxDisplayPixelWidth +maxDisplayPixelWidth=25600 + # trackDb table to use. A simple value of `trackDb' is normally sufficient. # In general, the value is a comma-separated list of trackDb format tables to # search. This supports local tracks combined with a mirror of the trackDb # table from UCSC. The names should be in the form `trackDb_suffix'. This # implies a parallel hgFindSpec format search table exists in the form # hgFindSpec_suffix. The specified trackDb tables are searched in the order # specified, with the first occurance of a track being used. You may associate # trackDb/hgFindSpec tables with other instances of genome databases using a # specification of profile:trackDbTbl, where profile is the name of a # databases profile in hg.conf, and trackDbTbl is the name of the table in the # remote databases. # db.trackDb=trackDb #db.trackDb=trackDb_local,trackDb #db.trackDb=trackDb,remoteDbs:trackDb @@ -181,36 +185,30 @@ # Option to disable the "All Tables" query in the table browser. Useful if # one wants to be restrictive about what tables can be seen. # hgta.disableAllTables=yes # If this option is enabled, the browser CGIs will attempt to generate a an # stack traceback on error and dump it to stderr (which is normally captured # in the web server error log). This requires the pstack package to be # install, which is available on for unix and linux systems. If # signalsHandler is enabled, the stack will also be printed when a signal # indicating an error occurs. browser.dumpStack=on # log signals signalsHandler=on -# turn on google analytics by setting this key. This is the identifier -# specified by your analytics account -# set key for analytics account, used in the getTracker(key) function -# -3 for hgwdev, -4 for hgw0, -5 for gBib, -6 for RR -analyticsKey=UA-4289047-3 - # These settings enable geographic allele frequency images on the # details pages for the HGDP Allele Frequency (hgdpGeo) track. # (HGDP = Human Genome Diversity Project) # Programs required for per-SNP geographic maps of HGDP population # allele frequencies: hgc.psxyPath=/hive/data/outside/GMT4.3.1/bin/psxy hgc.ps2rasterPath=/hive/data/outside/GMT4.3.1/bin/ps2raster hgc.ghostscriptPath=/usr/bin/ghostscript # Customize your downloads.server machine name here downloads.server=hgdownload-test.cse.ucsc.edu # Temporary flag to help disable new custom track validator if needed # If you turn the flag off, it reverts to the old validator newCustomTrackValidate=on @@ -263,27 +261,29 @@ #db.host=oursharedhost #db.user=readonly #db.password=access # #myStuff.host=localhost #myStuff.user=readonly #myStuff.password=access # #db.trackDb=myStuff:trackDb,trackDb #db.grp=myStuffgrp,grp # # set browser.javaScriptDir for per-developer javascript in trees that do NOT have their own DocumentRoot # browser.javaScriptDir=js/<your userid here> +# + #tell hdb.c code that this is our development server test.dev=on # No Sql Injection settings # values for level are ignore, logOnly, warn, abort noSqlInj.level=abort # values for dumpStack are on, off noSqlInj.dumpStack=on # Log visible tracks to error_log trackLog=on