814df69886d2dc7c791db10417901a9768931c88
angie
  Mon Jun 1 17:16:44 2015 -0700
Added support for bigGenePred to anno* libs for hgVai and hgIntegrator.
While updating annoFormatVep.c to use column indices from autoSql instead of
hardcoding genePred indices, I found that I had been using an incorrect index
for strand anyway -- so I removed 3 lines of no-op code.
refs #15439

diff --git src/hg/inc/bigGenePred.h src/hg/inc/bigGenePred.h
index bc96677..ae4ad70 100644
--- src/hg/inc/bigGenePred.h
+++ src/hg/inc/bigGenePred.h
@@ -1,25 +1,26 @@
 /* bigGenePred.h was originally generated by the autoSql program, which also 
  * generated bigGenePred.c and bigGenePred.sql.  This header links the database and
  * the RAM representation of objects. */
 
 #ifndef BIGGENEPRED_H
 #define BIGGENEPRED_H
 
 #define BIGGENEPRED_NUM_COLS 20
 
 #include "genePred.h"
+#include "asParse.h"
 
 extern char *bigGenePredCommaSepFieldNames;
 
 struct bigGenePred
 /* bigGenePred gene models */
     {
     struct bigGenePred *next;  /* Next in singly linked list. */
     char *chrom;	/* Reference sequence chromosome or scaffold */
     unsigned chromStart;	/* Start position in chromosome */
     unsigned chromEnd;	/* End position in chromosome */
     char *name;	/* Name or ID of item, ideally both human readable and unique */
     unsigned score;	/* Score (0-1000) */
     char strand[2];	/* + or - for strand */
     unsigned thickStart;	/* Start of where display should be thick (start codon) */
     unsigned thickEnd;	/* End of where display should be thick (stop codon) */
@@ -64,17 +65,19 @@
 
 void bigGenePredFreeList(struct bigGenePred **pList);
 /* Free a list of dynamically allocated bigGenePred's */
 
 void bigGenePredOutput(struct bigGenePred *el, FILE *f, char sep, char lastSep);
 /* Print out bigGenePred.  Separate fields with sep. Follow last field with lastSep. */
 
 #define bigGenePredTabOut(el,f) bigGenePredOutput(el,f,'\t','\n');
 /* Print out bigGenePred as a line in a tab-separated file. */
 
 #define bigGenePredCommaOut(el,f) bigGenePredOutput(el,f,',',',');
 /* Print out bigGenePred as a comma separated list including final comma. */
 
 /* -------------------------------- End autoSql Generated Code -------------------------------- */
 
-#endif /* BIGGENEPRED_H */
+struct asObject *bigGenePredAsObj();
+// Return asObject describing fields of bigGenePred
 
+#endif /* BIGGENEPRED_H */