2b071a11a1c5b03c5d193ac3b55afececca52c6e
braney
  Mon Jun 8 07:07:42 2015 -0700
more changes to gff3ToGenePred to support NCBI RefSeq.  #13673

diff --git src/inc/gff3.h src/inc/gff3.h
index f992df8..40f8558 100644
--- src/inc/gff3.h
+++ src/inc/gff3.h
@@ -201,38 +201,40 @@
 extern char *gff3AttrName;
 extern char *gff3AttrAlias;
 extern char *gff3AttrParent;
 extern char *gff3AttrTarget;
 extern char *gff3AttrGap;
 extern char *gff3AttrDerivesFrom;
 extern char *gff3AttrNote;
 extern char *gff3AttrDbxref;
 extern char *gff3AttrOntologyTerm;
 
 /* commonly used features names */
 extern char *gff3FeatGene;
 extern char *gff3FeatMRna;
 extern char *gff3FeatNCRna;
 extern char *gff3FeatRRna;
+extern char *gff3FeatTRna;
 extern char *gff3FeatExon;
 extern char *gff3FeatCDS;
 extern char *gff3FeatThreePrimeUTR;
 extern char *gff3FeatFivePrimeUTR;
 extern char *gff3FeatStartCodon;
 extern char *gff3FeatStopCodon;
 extern char *gff3FeatTranscript;
 extern char *gff3FeatPrimaryTranscript;
+extern char *gff3FeatVGeneSegment;
 
 struct gff3File *gff3FileOpen(char *fileName, int maxErr, FILE *errFh);
 /* Parse a GFF3 file into a gff3File object.  If maxErr not zero, then
  * continue to parse until this number of error have been reached.  A maxErr
  * less than zero does not stop reports all errors. Write errors to errFh,
  * if NULL, use stderr. */
 
 void gff3FileFree(struct gff3File **g3fPtr);
 /* Free a gff3File object */
 
 struct gff3Ann *gff3FileFindAnn(struct gff3File *g3f, char *id);
 /* find an annotation record by id, or NULL if not found. */
 
 struct gff3Attr *gff3AnnFindAttr(struct gff3Ann *g3a, char *tag);
 /* find a user attribute, or NULL */