041c046052d57d482c5a1cae842af4f556ab602f
jcasper
  Mon Jun 1 14:00:08 2015 -0700
Updated annotation data reference to 2015 update paper

diff --git src/hg/htdocs/cite.html src/hg/htdocs/cite.html
index d39d7f6..c025d9a 100755
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+++ src/hg/htdocs/cite.html
@@ -101,37 +101,42 @@
 		    Journal-quality screen shots of the Genome Browser can be produced by using the 
 		    PDF/PS utility accessed via the View menu in the top navigation bar on the 
 		    tracks display page. When including a screen shot in your manuscript, reference 
 		    <em>http://genome.ucsc.edu</em> in the caption and cite the Genome Browser paper
 		    in the manuscript. Don't forget to mention the genome assembly used to produce 
 		    the image. When including a Genome Browser URL, please remove the
 		    <em>hgsid</em> parameter. It is an internally-used parameter that expires after 
 		    about a day.
 		    </P>
 		    <P>
 		    <HR>
 		    <FONT SIZE="4"><B>Genome Browser Data</B></FONT>
 		    </P>
 		    <P>
 		    <B>Annotation data:</B>
-		    Karolchik D, Barber GP, Casper J, Clawson H, Cline MS, Diekhans M, Dreszer TR, 
-		    Fujita PA, Guruvadoo L, Haeussler M, Harte RA, Heitner S, Hinrichs AS, 
-		    Learned K, Lee BT, Li CH, Raney BJ, Rhead B, Rosenbloom KR, Sloan CA, Speir ML, 
-		    Zweig AS, Haussler D, Kuhn RM, Kent WJ.
-		    <A href="http://nar.oxfordjournals.org/content/42/D1/D764.long"
-		    target="_blank">The UCSC Genome Browser database: 2014 update</A>.  
-		    <em>Nucleic Acids Res</em>. 2014 Jan 1;42(1):D764-70. 
+        Rosenbloom KR, Armstrong J, Barber GP, Casper J, Clawson H, Diekhans M,
+        Dreszer TR, Fujita PA, Guruvadoo L, Haeussler M, Harte RA, Heitner S,
+        Hickey G, Hinrichs AS, Hubley R, Karolchik D, Learned K, Lee BT, Li CH,
+        Miga KH, Nguyen N, Paten B, Raney BJ, Smit AF, Speir ML, Zweig AS,
+        Haussler D, Kuhn RM, Kent WJ.
+        <a href="http://nar.oxfordjournals.org/content/43/D1/D670.long"
+        target="_blank"> The UCSC Genome Browser database: 2015 update</a>.
+        <em>Nucleic Acids Res</em>. 2015 Jan;43(Database issue):D670-81.
+        PMID: <a href="http://www.ncbi.nlm.nih.gov/pubmed/25428374"
+        target="_blank">25428374</a>; PMC: <a
+        href="http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4383971/"
+        target="_blank">PMC4383971</a>
 		    <BR>
 		    <em>Cite this paper for annotation data extracted from the Genome 
 		    Browser database. Annotation tracks should also be 
 		    credited according to their source, which can be found 
 		    on the track's description page or on the Genome Browser 
 		    <A HREF="goldenPath/credits.html">Credits</A> page. </em>
                     </P>
 		    <P>
 		    <B>ENCODE annotation data:</B> 
 		    Rosenbloom KR, Sloan CA, Malladi VS, Dreszer TR, Learned K, Kirkup VM, Wong MC, 
 		    Maddren M, Fang R, Heitner SG, Lee BT, Barber GP, Harte RA, Diekhans M, Long JC,
 		    Wilder SP, Zweig AS, Karolchik D, Kuhn RM, Haussler D, Kent WJ.
 		    <A HREF="http://nar.oxfordjournals.org/cgi/pmidlookup?view=long&amp;pmid=23193274" 
 		    TARGET="_blank">ENCODE data in the UCSC Genome Browser: year 5 update</A>.
 		    <em>Nucleic Acids Res</em>. 2013 Jan;41(Database issue):D56-63.