Commits for hiram

v318_preview to v318_preview2 (2015-06-08 to 2015-06-15) v318

• Added bisBis1 - Bison bison bison refs #15388
  
  • src/hg/makeDb/schema/all.joiner - lines changed 11, context: html, text, full: html, text
• addingrn6 lastz/chain/net refs #15476
  
  • src/hg/makeDb/doc/hg19.txt - lines changed 59, context: html, text, full: html, text
• addingrn6 lastz/chain/net refs #15476
  
  • src/hg/makeDb/doc/rn6.txt - lines changed 26, context: html, text, full: html, text
• eliminate an extra -verbose=10 from many genbank load commands refs #15056
  
  • src/hg/makeDb/doc/bosTau8.txt - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/doc/danRer10/initialBuild.txt - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/doc/macFas5/initialBuild.txt - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/doc/nasLar1/initialBuild.txt - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/doc/rhiRox1/initialBuild.txt - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/doc/tarSyr2/initialBuild.txt - lines changed 1, context: html, text, full: html, text
• Added ornAna2 - platypus refs #15098
  
  • src/hg/makeDb/genbank/etc/align.dbs - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/genbank/etc/hgwdev.dbs - lines changed 2, context: html, text, full: html, text
• updated for ornAna2 table coverage refs #15098
  
  • src/hg/makeDb/schema/all.joiner - lines changed 1, context: html, text, full: html, text
• Added nanPar1 - Tibetan frog refs #15056
  
  • src/hg/makeDb/genbank/etc/align.dbs - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/genbank/etc/hgwdev.dbs - lines changed 1, context: html, text, full: html, text
• adding nanPar1 - Tibetan frog refs #15056
  
  • src/hg/makeDb/schema/all.joiner - lines changed 12, context: html, text, full: html, text
• photo from Caroline Härdter flicker dotpolka www.flickr.com/people/dotpolka/ refs #15515
  
  • src/hg/htdocs/images/Manis_pentadactyla.jpg - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change shows no diff)
• initial files from makeGenomeDb.pl for manPen1 refs #15515
  
  • src/hg/makeDb/trackDb/makefile - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/pangolin/manPen1/description.html - lines changed 63, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/pangolin/manPen1/gap.html - lines changed 30, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/pangolin/manPen1/gold.html - lines changed 34, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/pangolin/manPen1/trackDb.ra - lines changed 8, context: html, text, full: html, text
• Added manPen1/Pangolin; refs #15515
  
  • src/hg/makeDb/genbank/etc/genbank.conf - lines changed 18, context: html, text, full: html, text
• Added manPen Pangolin/Manis pentadactyla (javanica) refs #15515
  
  • src/hg/makeDb/genbank/src/lib/gbGenome.c - lines changed 2, context: html, text, full: html, text
• wrapped up and in the pushQ 007598 refs #15292
  
  • src/hg/makeDb/doc/micMur2/initialBuild.txt - lines changed 34, context: html, text, full: html, text
  • src/hg/makeDb/doc/micMur2/lastzRuns.txt - lines changed 81, context: html, text, full: html, text
• adding ce11 to the build refs #15209
  
  • src/hg/makeDb/trackDb/makefile - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/worm/ce11/description.html - lines changed 63, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/worm/ce11/gap.html - lines changed 29, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/worm/ce11/gold.html - lines changed 33, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/worm/ce11/trackDb.ra - lines changed 8, context: html, text, full: html, text
• Added ce11; refs #15209
  
  • src/hg/makeDb/genbank/etc/genbank.conf - lines changed 21, context: html, text, full: html, text
• add search rule for gold table refs #15209
  
  • src/hg/makeDb/trackDb/worm/ce11/trackDb.ra - lines changed 5, context: html, text, full: html, text
• running up genbank refs #15209
  
  • src/hg/makeDb/doc/ce11/initialBuild.txt - lines changed 501, context: html, text, full: html, text
  • src/hg/makeDb/doc/ce11/ucscCompositeAgp.pl - lines changed 62, context: html, text, full: html, text
• v318 preview2 refs #15485
  
  • src/utils/qa/weeklybld/buildEnv.csh - lines changed 2, context: html, text, full: html, text