All File Changes

v319_preview2 to v319_base (2015-07-06 to 2015-07-13) v319

• src/hg/hgTables/galaxy.c
  • lines changed 6, context: html, text, full: html, text
    adding an hg.conf var for galaxy, refs #12642
    
• src/hg/hgc/peakClusters.c
  • lines changed 1, context: html, text, full: html, text
    Bug fix: limit View DNA to named item. Thanks Braney. refs #15495
    
• src/hg/htdocs/goldenPath/help/trackDb/README.txt
  • lines changed 16, context: html, text, full: html, text
    Add developer instructions to README and doc library file. refs #10015
    
• src/hg/htdocs/goldenPath/help/trackDb/trackDbDoc.js
  • lines changed 8, context: html, text, full: html, text
    Suppress 'Support Level' display for 'type bam', etc. sections. There is already a section for 'type' that shows its level. refs #10015
    
• src/hg/htdocs/goldenPath/help/trackDb/trackDbHub.v1.html
  • lines changed 67, context: html, text, full: html, text
    Revamping intro on trackDbHub page refs #10015
    
  • lines changed 4, context: html, text, full: html, text
    Fix syntax err in HTML. refs #10015
    
  • lines changed 12, context: html, text, full: html, text
    Changing wording about levels based on input refs #10015
    
  • lines changed 4, context: html, text, full: html, text
    Correcting typo vesion->version refs #10015
    
• src/hg/htdocs/goldenPath/help/trackDb/trackDbLibrary.shtml
  • lines changed 12, context: html, text, full: html, text
    Add developer instructions to README and doc library file. refs #10015
    
  • lines changed 16, context: html, text, full: html, text
    Restoring accidentally dropped section (priority). refs #10015
    
• src/hg/htdocs/images/Ascaris_suum.jpg
  • lines changed 0, context: html, text, full: html, text
    photo from CDC public domain refs #15209
    
• src/hg/htdocs/images/Dirofilaria_immitis.jpg
  • lines changed 0, context: html, text, full: html, text
    photo from R.E. Pugh parasitology collection refs #15209
    
• src/hg/htdocs/images/Loa_loa.jpg
  • lines changed 0, context: html, text, full: html, text
    image from CDC public domain refs #15209
    
• src/hg/htdocs/images/Onchocerca_volvulus.jpg
  • lines changed 0, context: html, text, full: html, text
    adding oncVol1 Onchocerca_volvulus from R.E. Pugh parasitology collection refs #15209
    
• src/hg/htdocs/images/Strongyloides_ratti.jpg
  • lines changed 0, context: html, text, full: html, text
    photo from Mark Vinney/University of Bristol http://www.bristol.ac.uk/biology/people/mark-e-viney/index.html refs #15209
    
• src/hg/htdocs/images/Trichinella_spiralis.jpg
  • lines changed 0, context: html, text, full: html, text
    photo from CDC refs #15209
    
• src/hg/htdocs/images/Trichuris_suis.jpg
  • lines changed 0, context: html, text, full: html, text
    photo from CDC public domain refs #15209
    
• src/hg/htdocs/training/index.html
  • lines changed 12, context: html, text, full: html, text
    added two future workshops: munich and ESHG 2016
    
  • lines changed 15, context: html, text, full: html, text
    removed Mt. Sinai til I'm sure of the location. It's not Cedars-Sinai
    
• src/hg/inc/versionInfo.h
  • lines changed 1, context: html, text, full: html, text
    New version number v319
    
• src/hg/js/model/hgIntegrator/hgIntegratorModel.js
  • lines changed 22, context: html, text, full: html, text
    When making schema links to the table browser, be careful to differentiate
    between track and table name because every once in a while they differ.
    refs #15676
    
• src/hg/js/model/lib/CladeOrgDbMixin.js
  • lines changed 12, context: html, text, full: html, text
    Separate processing of related cart vars in a nondeterministic order
    was wreaking havoc with clade/org/db menus for non-default dbs.
    For now, wrap those cart vars together so that they are processed
    correctly.
    
    It would be better still to make registerCartVarHandler reject lists
    of variables; one variable, one handler function. If that proves
    inconvenient, then we could bind lists of variables to a single
    handler function.
    
    refs #15681
    
• src/hg/js/model/lib/cart.js
  • lines changed 5, context: html, text, full: html, text
    Exit out of ajax error handler if it looks like the error is due to the
    user navigating away from the page.
    refs #15533
    
• src/hg/lib/cartJson.c
  • lines changed 2, context: html, text, full: html, text
    Separate processing of related cart vars in a nondeterministic order
    was wreaking havoc with clade/org/db menus for non-default dbs.
    For now, wrap those cart vars together so that they are processed
    correctly.
    
    It would be better still to make registerCartVarHandler reject lists
    of variables; one variable, one handler function. If that proves
    inconvenient, then we could bind lists of variables to a single
    handler function.
    
    refs #15681
    
• src/hg/makeDb/doc/caeAng1.txt
  • lines changed 17, context: html, text, full: html, text
    liftOver to caeAng2 refs #15209
    
• src/hg/makeDb/doc/ce11/lastzRuns.txt
  • lines changed 57, context: html, text, full: html, text
    done with haeCon2 lastz/chain/net refs #15209
    
  • lines changed 171, context: html, text, full: html, text
    don with caeSp111 bruMal2 caeSp51 refs #15209
    
  • lines changed 242, context: html, text, full: html, text
    finished with caeSp5 strRat2 strRat1 burXyl1 oncVol1 refs #15209
    
• src/hg/makeDb/doc/haeCon1.txt
  • lines changed 17, context: html, text, full: html, text
    adding liftOvers haeCon1 and 2 both ways and the build of haeCon2 refs #15209
    
• src/hg/makeDb/doc/hg17.txt
  • lines changed 1, context: html, text, full: html, text
    oops fixed comment in hg17 make doc for haplotypeLocations
    
• src/hg/makeDb/doc/hg19.txt
  • lines changed 29, context: html, text, full: html, text
    Renamed Cooper track to 'CNV Developmental Delay'; incorporated nstd100 data into track; added Coe reference to description page; updated make docs; refs #9391
    
• src/hg/makeDb/doc/hg38/hg38.txt
  • lines changed 31, context: html, text, full: html, text
    Renamed Cooper track to 'CNV Developmental Delay'; incorporated nstd100 data into track; added Coe reference to description page; updated make docs; refs #9391
    
• src/hg/makeDb/doc/melInc1.txt
  • lines changed 17, context: html, text, full: html, text
    liftOvers from melInc1 and 2 both ways and melInc2 browser building refs #15209
    
• src/hg/makeDb/doc/mm10.txt
  • lines changed 19, context: html, text, full: html, text
    added a warning about mm10Haplotypes table which reall contains alternate scaffolds from other mice strains rather than althernate haplotypes from mm10
    
• src/hg/makeDb/doc/priPac1.txt
  • lines changed 17, context: html, text, full: html, text
    liftOvers between priPac3 and priPac1 and 2 both ways and priPac3 browser build refs #15209
    
• src/hg/makeDb/doc/priPac2.txt
  • lines changed 17, context: html, text, full: html, text
    liftOvers between priPac3 and priPac1 and 2 both ways and priPac3 browser build refs #15209
    
• src/hg/makeDb/doc/worms/bruMal2.txt
  • lines changed 459, context: html, text, full: html, text
    starting build of bruMal2 refs #15209
    
• src/hg/makeDb/doc/worms/burXyl1.txt
  • lines changed 418, context: html, text, full: html, text
    running up burXyl1 dirImm1 oncVol1 refs #15209
    
• src/hg/makeDb/doc/worms/caeAng2.txt
  • lines changed 117, context: html, text, full: html, text
    liftOvers from caeAng1 and 2 both ways and caeAng2 browser build refs #15209
    
• src/hg/makeDb/doc/worms/caeSp51.txt
  • lines changed 463, context: html, text, full: html, text
    running up assemblies for caeSp51 strRat1 strRat2 and strRat2 is an organized assmbly so include scripts used refs #15209
    
  • lines changed 68, context: html, text, full: html, text
    done with default set of tracks refs #15209
    
• src/hg/makeDb/doc/worms/dirImm1.txt
  • lines changed 435, context: html, text, full: html, text
    running up burXyl1 dirImm1 oncVol1 refs #15209
    
• src/hg/makeDb/doc/worms/haeCon2.txt
  • lines changed 445, context: html, text, full: html, text
    adding liftOvers haeCon1 and 2 both ways and the build of haeCon2 refs #15209
    
• src/hg/makeDb/doc/worms/loaLoa1.txt
  • lines changed 440, context: html, text, full: html, text
    running up assemblies Trichinella spiralis, Trichuris suis, Loa loa refs #15209
    
• src/hg/makeDb/doc/worms/melInc2.txt
  • lines changed 43, context: html, text, full: html, text
    liftOvers from melInc1 and 2 both ways and melInc2 browser building refs #15209
    
• src/hg/makeDb/doc/worms/oncVol1.txt
  • lines changed 432, context: html, text, full: html, text
    running up burXyl1 dirImm1 oncVol1 refs #15209
    
• src/hg/makeDb/doc/worms/panRed1.txt
  • lines changed 72, context: html, text, full: html, text
    done with initial tracks refs #15209
    
• src/hg/makeDb/doc/worms/priPac3.txt
  • lines changed 141, context: html, text, full: html, text
    liftOvers between priPac3 and priPac1 and 2 both ways and priPac3 browser build refs #15209
    
• src/hg/makeDb/doc/worms/strRat1.txt
  • lines changed 453, context: html, text, full: html, text
    running up assemblies for caeSp51 strRat1 strRat2 and strRat2 is an organized assmbly so include scripts used refs #15209
    
  • lines changed 60, context: html, text, full: html, text
    completed most tracks ready for lastz runs refs #15209
    
• src/hg/makeDb/doc/worms/strRat2.txt
  • lines changed 447, context: html, text, full: html, text
    running up assemblies for caeSp51 strRat1 strRat2 and strRat2 is an organized assmbly so include scripts used refs #15209
    
  • lines changed 59, context: html, text, full: html, text
    completed most tracks ready for lastz runs refs #15209
    
• src/hg/makeDb/doc/worms/triSpi1.txt
  • lines changed 439, context: html, text, full: html, text
    running up assemblies Trichinella spiralis, Trichuris suis, Loa loa refs #15209
    
• src/hg/makeDb/doc/worms/triSui1.txt
  • lines changed 443, context: html, text, full: html, text
    running up assemblies Trichinella spiralis, Trichuris suis, Loa loa refs #15209
    
• src/hg/makeDb/doc/worms/ucscCompositeAgp.pl
  • lines changed 62, context: html, text, full: html, text
    running up assemblies for caeSp51 strRat1 strRat2 and strRat2 is an organized assmbly so include scripts used refs #15209
    
• src/hg/makeDb/doc/worms/unlocalized.pl
  • lines changed 79, context: html, text, full: html, text
    running up assemblies for caeSp51 strRat1 strRat2 and strRat2 is an organized assmbly so include scripts used refs #15209
    
• src/hg/makeDb/doc/worms/unplaced.pl
  • lines changed 48, context: html, text, full: html, text
    running up assemblies for caeSp51 strRat1 strRat2 and strRat2 is an organized assmbly so include scripts used refs #15209
    
• src/hg/makeDb/genbank/etc/align.dbs
  • lines changed 1, context: html, text, full: html, text
    Added priPac3 - Pristionchus pacificus refs #15209
    
• src/hg/makeDb/genbank/etc/hgwdev.dbs
  • lines changed 2, context: html, text, full: html, text
    Added priPac3 - Pristionchus pacificus refs #15209
    
• src/hg/makeDb/schema/all.joiner
  • lines changed 9, context: html, text, full: html, text
    adding priPac3 definitions refs #15209
    
• src/hg/makeDb/trackDb/augustusGene.html
  • lines changed 20, context: html, text, full: html, text
    Updates and edits to Augustus Genes description page, refs #13088
    
• src/hg/makeDb/trackDb/cow/bosTau8/description.html
  • lines changed 1, context: html, text, full: html, text
    fixing links on various assembly gateway description pages
    
• src/hg/makeDb/trackDb/human/cnvDevDelay.html
  • lines changed 52, context: html, text, full: html, text
    Renamed Cooper track to 'CNV Developmental Delay'; incorporated nstd100 data into track; added Coe reference to description page; updated make docs; refs #9391
    
• src/hg/makeDb/trackDb/human/cooperDevDelay.html
  • lines changed 32, context: html, text, full: html, text
    Renamed Cooper track to 'CNV Developmental Delay'; incorporated nstd100 data into track; added Coe reference to description page; updated make docs; refs #9391
    
• src/hg/makeDb/trackDb/human/hg18/ceuBcellRNASeq.html
  • lines changed 8, context: html, text, full: html, text
    Fixing broken links on hg18 track description pages
    
• src/hg/makeDb/trackDb/human/hg18/consIndelsHgMmCanFam.html
  • lines changed 3, context: html, text, full: html, text
    Fixing broken links on hg18 track description pages
    
• src/hg/makeDb/trackDb/human/hg18/description.html
  • lines changed 2, context: html, text, full: html, text
    Fixing broken links on hg18 track description pages
    
• src/hg/makeDb/trackDb/human/hg18/encodeAffyRnaSignal.html
  • lines changed 1, context: html, text, full: html, text
    Fixing broken links on hg18 track description pages
    
• src/hg/makeDb/trackDb/human/hg18/encodeAffyRnaTransfrags.html
  • lines changed 1, context: html, text, full: html, text
    Fixing broken links on hg18 track description pages
    
• src/hg/makeDb/trackDb/human/hg18/encodeNhgriDukeDnaseHs.html
  • lines changed 2, context: html, text, full: html, text
    Fixing broken links on hg18 track description pages
    
• src/hg/makeDb/trackDb/human/hg18/encodeUcsdNgGif.html
  • lines changed 4, context: html, text, full: html, text
    Fixing broken links on hg18 track description pages
    
• src/hg/makeDb/trackDb/human/hg18/evofoldV2.html
  • lines changed 0, context: html, text, full: html, text
    Fixing broken links on hg18 track description pages
    
• src/hg/makeDb/trackDb/human/hg18/knownGene.html
  • lines changed 2, context: html, text, full: html, text
    Fixing broken links on hg18 track description pages
    
• src/hg/makeDb/trackDb/human/hg18/targetScanS.html
  • lines changed 3, context: html, text, full: html, text
    Fixing broken links on hg18 track description pages
    
• src/hg/makeDb/trackDb/human/hg18/wgEncodeChromatinMapRelease2.html
  • lines changed 4, context: html, text, full: html, text
    Fixing broken links on hg18 track description pages
    
• src/hg/makeDb/trackDb/human/hg18/wgEncodeGisRnaPet.html
  • lines changed 1, context: html, text, full: html, text
    Fixing broken links on hg18 track description pages
    
• src/hg/makeDb/trackDb/human/hg18/wgEncodeHudsonalphaMethyl27.html
  • lines changed 5, context: html, text, full: html, text
    Fixing broken links on hg18 track description pages
    
• src/hg/makeDb/trackDb/human/hg18/wgEncodeSangerGencode.html
  • lines changed 1, context: html, text, full: html, text
    Fixing broken links on hg18 track description pages
    
• src/hg/makeDb/trackDb/human/hg18/wgEncodeSunyalbanyRnaGeneChip.html
  • lines changed 1, context: html, text, full: html, text
    Fixing broken links on hg18 track description pages
    
• src/hg/makeDb/trackDb/human/hgdpFst.html
  • lines changed 1, context: html, text, full: html, text
    Fixing broken links on hg18 track description pages
    
• src/hg/makeDb/trackDb/human/hgdpIhs.html
  • lines changed 1, context: html, text, full: html, text
    Fixing broken links on hg18 track description pages
    
• src/hg/makeDb/trackDb/human/hgdpXpehh.html
  • lines changed 2, context: html, text, full: html, text
    Fixing broken links on hg18 track description pages
    
• src/hg/makeDb/trackDb/human/trackDb.ra
  • lines changed 11, context: html, text, full: html, text
    Renamed Cooper track to 'CNV Developmental Delay'; incorporated nstd100 data into track; added Coe reference to description page; updated make docs; refs #9391
    
  • lines changed 1, context: html, text, full: html, text
    Per Jim, updated track short label to 'Development Delay'; refs #9391
    
• src/hg/makeDb/trackDb/makefile
  • lines changed 1, context: html, text, full: html, text
    adding bruMal2 to the build refs #15209
    
  • lines changed 1, context: html, text, full: html, text
    adding strRat1 to the build refs #15209
    
  • lines changed 1, context: html, text, full: html, text
    adding strRat2 to the build refs #15209
    
  • lines changed 1, context: html, text, full: html, text
    adding dirImm1 to the build refs #15209
    
  • lines changed 1, context: html, text, full: html, text
    adding burXyl1 to the build refs #15209
    
  • lines changed 1, context: html, text, full: html, text
    adding Onchocerca volvulus oncVol1 to the build refs #15209
    
  • lines changed 1, context: html, text, full: html, text
    adding caeSp51 to the build refs #15209
    
  • lines changed 1, context: html, text, full: html, text
    adding Trichinella spiralis triSpi1 to the build refs #15209
    
  • lines changed 1, context: html, text, full: html, text
    adding Trichuris suis triSui1 refs #15209
    
  • lines changed 1, context: html, text, full: html, text
    addgin Loa loa loaLoa1 to the build refs #15209
    
• src/hg/makeDb/trackDb/rat/rn6/description.html
  • lines changed 1, context: html, text, full: html, text
    fixing links on various assembly gateway description pages
    
• src/hg/makeDb/trackDb/turkey/melGal1/description.html
  • lines changed 1, context: html, text, full: html, text
    fixing links on various assembly gateway description pages
    
• src/hg/makeDb/trackDb/worm/bruMal2/description.html
  • lines changed 63, context: html, text, full: html, text
    adding bruMal2 to the build refs #15209
    
• src/hg/makeDb/trackDb/worm/bruMal2/gap.html
  • lines changed 31, context: html, text, full: html, text
    adding bruMal2 to the build refs #15209
    
• src/hg/makeDb/trackDb/worm/bruMal2/gold.html
  • lines changed 34, context: html, text, full: html, text
    adding bruMal2 to the build refs #15209
    
• src/hg/makeDb/trackDb/worm/bruMal2/trackDb.ra
  • lines changed 8, context: html, text, full: html, text
    adding bruMal2 to the build refs #15209
    
  • lines changed 6, context: html, text, full: html, text
    add gold table search rule refs #15209
    
• src/hg/makeDb/trackDb/worm/burXyl1/description.html
  • lines changed 63, context: html, text, full: html, text
    adding burXyl1 to the build refs #15209
    
• src/hg/makeDb/trackDb/worm/burXyl1/gap.html
  • lines changed 30, context: html, text, full: html, text
    adding burXyl1 to the build refs #15209
    
• src/hg/makeDb/trackDb/worm/burXyl1/gold.html
  • lines changed 34, context: html, text, full: html, text
    adding burXyl1 to the build refs #15209
    
• src/hg/makeDb/trackDb/worm/burXyl1/trackDb.ra
  • lines changed 8, context: html, text, full: html, text
    adding burXyl1 to the build refs #15209
    
• src/hg/makeDb/trackDb/worm/caeSp51/description.html
  • lines changed 63, context: html, text, full: html, text
    adding caeSp51 to the build refs #15209
    
• src/hg/makeDb/trackDb/worm/caeSp51/gap.html
  • lines changed 30, context: html, text, full: html, text
    adding caeSp51 to the build refs #15209
    
• src/hg/makeDb/trackDb/worm/caeSp51/gold.html
  • lines changed 33, context: html, text, full: html, text
    adding caeSp51 to the build refs #15209
    
• src/hg/makeDb/trackDb/worm/caeSp51/trackDb.ra
  • lines changed 8, context: html, text, full: html, text
    adding caeSp51 to the build refs #15209
    
  • lines changed 5, context: html, text, full: html, text
    adding gold table search rule refs #15209
    
• src/hg/makeDb/trackDb/worm/dirImm1/description.html
  • lines changed 63, context: html, text, full: html, text
    adding dirImm1 to the build refs #15209
    
  • lines changed 3, context: html, text, full: html, text
    reset assembly info link to WormBase refs #15209
    
• src/hg/makeDb/trackDb/worm/dirImm1/gap.html
  • lines changed 30, context: html, text, full: html, text
    adding dirImm1 to the build refs #15209
    
• src/hg/makeDb/trackDb/worm/dirImm1/gold.html
  • lines changed 34, context: html, text, full: html, text
    adding dirImm1 to the build refs #15209
    
• src/hg/makeDb/trackDb/worm/dirImm1/trackDb.ra
  • lines changed 8, context: html, text, full: html, text
    adding dirImm1 to the build refs #15209
    
  • lines changed 5, context: html, text, full: html, text
    adding gold table search rule refs #15209
    
• src/hg/makeDb/trackDb/worm/loaLoa1/description.html
  • lines changed 63, context: html, text, full: html, text
    addgin Loa loa loaLoa1 to the build refs #15209
    
• src/hg/makeDb/trackDb/worm/loaLoa1/gap.html
  • lines changed 30, context: html, text, full: html, text
    addgin Loa loa loaLoa1 to the build refs #15209
    
• src/hg/makeDb/trackDb/worm/loaLoa1/gold.html
  • lines changed 34, context: html, text, full: html, text
    addgin Loa loa loaLoa1 to the build refs #15209
    
• src/hg/makeDb/trackDb/worm/loaLoa1/trackDb.ra
  • lines changed 8, context: html, text, full: html, text
    addgin Loa loa loaLoa1 to the build refs #15209
    
  • lines changed 5, context: html, text, full: html, text
    add gold table search rule refs #15209
    
• src/hg/makeDb/trackDb/worm/oncVol1/description.html
  • lines changed 63, context: html, text, full: html, text
    adding Onchocerca volvulus oncVol1 to the build refs #15209
    
• src/hg/makeDb/trackDb/worm/oncVol1/gap.html
  • lines changed 30, context: html, text, full: html, text
    adding Onchocerca volvulus oncVol1 to the build refs #15209
    
• src/hg/makeDb/trackDb/worm/oncVol1/gold.html
  • lines changed 34, context: html, text, full: html, text
    adding Onchocerca volvulus oncVol1 to the build refs #15209
    
• src/hg/makeDb/trackDb/worm/oncVol1/trackDb.ra
  • lines changed 8, context: html, text, full: html, text
    adding Onchocerca volvulus oncVol1 to the build refs #15209
    
  • lines changed 5, context: html, text, full: html, text
    add gold table search rule refs #15209
    
• src/hg/makeDb/trackDb/worm/strRat1/description.html
  • lines changed 63, context: html, text, full: html, text
    adding strRat1 to the build refs #15209
    
  • lines changed 1, context: html, text, full: html, text
    correct note of reference for photo refs #15209
    
• src/hg/makeDb/trackDb/worm/strRat1/gap.html
  • lines changed 30, context: html, text, full: html, text
    adding strRat1 to the build refs #15209
    
• src/hg/makeDb/trackDb/worm/strRat1/gold.html
  • lines changed 33, context: html, text, full: html, text
    adding strRat1 to the build refs #15209
    
• src/hg/makeDb/trackDb/worm/strRat1/trackDb.ra
  • lines changed 8, context: html, text, full: html, text
    adding strRat1 to the build refs #15209
    
• src/hg/makeDb/trackDb/worm/strRat2/description.html
  • lines changed 63, context: html, text, full: html, text
    adding strRat2 to the build refs #15209
    
  • lines changed 1, context: html, text, full: html, text
    correct note of reference for photo refs #15209
    
• src/hg/makeDb/trackDb/worm/strRat2/gap.html
  • lines changed 29, context: html, text, full: html, text
    adding strRat2 to the build refs #15209
    
• src/hg/makeDb/trackDb/worm/strRat2/gold.html
  • lines changed 34, context: html, text, full: html, text
    adding strRat2 to the build refs #15209
    
• src/hg/makeDb/trackDb/worm/strRat2/trackDb.ra
  • lines changed 8, context: html, text, full: html, text
    adding strRat2 to the build refs #15209
    
  • lines changed 5, context: html, text, full: html, text
    adding gold table search rule refs #15209
    
• src/hg/makeDb/trackDb/worm/trackDb.chainNet.ra
  • lines changed 338, context: html, text, full: html, text
    adding definitions for caeAng2 melInc2 priPac3 haeCon2 haeCon1 bruMal2 refs #15209
    
  • lines changed 392, context: html, text, full: html, text
    adding caeSp51 panRed1 burXyl1 melHap1 strRat1 strRat2 oncVol1 refs #15209
    
• src/hg/makeDb/trackDb/worm/triSpi1/description.html
  • lines changed 63, context: html, text, full: html, text
    adding Trichinella spiralis triSpi1 to the build refs #15209
    
• src/hg/makeDb/trackDb/worm/triSpi1/gap.html
  • lines changed 30, context: html, text, full: html, text
    adding Trichinella spiralis triSpi1 to the build refs #15209
    
• src/hg/makeDb/trackDb/worm/triSpi1/gold.html
  • lines changed 34, context: html, text, full: html, text
    adding Trichinella spiralis triSpi1 to the build refs #15209
    
• src/hg/makeDb/trackDb/worm/triSpi1/trackDb.ra
  • lines changed 8, context: html, text, full: html, text
    adding Trichinella spiralis triSpi1 to the build refs #15209
    
  • lines changed 5, context: html, text, full: html, text
    adding gold table search rule refs #15209
    
• src/hg/makeDb/trackDb/worm/triSui1/description.html
  • lines changed 63, context: html, text, full: html, text
    adding Trichuris suis triSui1 refs #15209
    
• src/hg/makeDb/trackDb/worm/triSui1/gap.html
  • lines changed 30, context: html, text, full: html, text
    adding Trichuris suis triSui1 refs #15209
    
• src/hg/makeDb/trackDb/worm/triSui1/gold.html
  • lines changed 34, context: html, text, full: html, text
    adding Trichuris suis triSui1 refs #15209
    
• src/hg/makeDb/trackDb/worm/triSui1/trackDb.ra
  • lines changed 8, context: html, text, full: html, text
    adding Trichuris suis triSui1 refs #15209
    
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    adding gold table search rule refs #15209
    
• src/hg/makeDb/trackDb/xenTro/xenTro1/description.html
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    fixing links on various assembly gateway description pages
    
• src/hg/utils/checkUrlsInTable/checkUrlsInTable.c
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    Extend checker to handle other kinds of tables, columns and errors. refs #10318
    
• src/hg/utils/hubCheck/hubCheck.c
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    Remove -test from usage, as this is for internal use. refs #10015
    
• src/hg/utils/otto/clinvar/clinVarToBed
  • lines changed 8, context: html, text, full: html, text
    clinvar has added three more fields to their dump file. Not showing them
    on the hgc pages, just patching the script. refs #14045
    
• src/lib/annoFormatTab.c
  • lines changed 16, context: html, text, full: html, text
    When averaging wig values, skip over NAN values so that they don't
    cause the sum and average to be NAN. If all values in range are NAN,
    just return NULL words so that nothing is output -- there are no valid
    overlapping values.
    refs #15675
    
• src/product/ex.hg.conf
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    adding galaxy hg.conf option doc, refs #12642
    
• src/utils/pslScore/pslScore.c
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    add information about column meanings in output in usage message refs #15635
    
• src/utils/qa/weeklybld/buildEnv.csh
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    v319 final build refs #15624
    

• lines changed: 8864
• files changed: 157