Commits for hiram

v318_base to v319_preview (2015-06-22 to 2015-06-29) v319

• done and in the pushQ 007601 refs #15056
  
  • src/hg/makeDb/doc/nanPar1/initialBuild.txt - lines changed 24, context: html, text, full: html, text
• in the pushQ 007602 refs #15515
  
  • src/hg/makeDb/doc/manPen1/initialBuild.txt - lines changed 62, context: html, text, full: html, text
• adding microsat track refs #15056
  
  • src/hg/makeDb/doc/nanPar1/initialBuild.txt - lines changed 10, context: html, text, full: html, text
• add the microsat track refs #8231
  
  • src/hg/makeDb/doc/panPan1.txt - lines changed 10, context: html, text, full: html, text
• in the pushQ 007603 refs #15098
  
  • src/hg/makeDb/doc/ornAna2/initialBuild.txt - lines changed 51, context: html, text, full: html, text
• adding microsat track refs #11174
  
  • src/hg/makeDb/doc/macFas5/initialBuild.txt - lines changed 10, context: html, text, full: html, text
• adding microsat track refs #14412
  
  • src/hg/makeDb/doc/felCat8/initialBuild.txt - lines changed 10, context: html, text, full: html, text
• adding microsat track refs #14438
  
  • src/hg/makeDb/doc/rhiRox1/initialBuild.txt - lines changed 10, context: html, text, full: html, text
• adding microsat track refs #14437
  
  • src/hg/makeDb/doc/nasLar1/initialBuild.txt - lines changed 10, context: html, text, full: html, text
• adding microsat track refs #11172
  
  • src/hg/makeDb/doc/chlSab2/initialBuild.txt - lines changed 10, context: html, text, full: html, text
• adding lastz chain net to nanPar1 and add microsat track refs #9868
  
  • src/hg/makeDb/doc/xenTro7.txt - lines changed 286, context: html, text, full: html, text
• adding microsat track refs #15096
  
  • src/hg/makeDb/doc/aquChr2/initialBuild.txt - lines changed 10, context: html, text, full: html, text
• adding microsat track refs #15292
  
  • src/hg/makeDb/doc/micMur2/initialBuild.txt - lines changed 10, context: html, text, full: html, text
• complete and in the pushQ 007599 with augustusGene and microsat tracks refs #15388
  
  • src/hg/makeDb/doc/bisBis1/initialBuild.txt - lines changed 45, context: html, text, full: html, text
• adding microsat track refs #15056
  
  • src/hg/makeDb/doc/nanPar1/initialBuild.txt - lines changed 1, context: html, text, full: html, text
• adding worm base gene track refs #15209
  
  • src/hg/makeDb/trackDb/worm/ce11/trackDb.ra - lines changed 18, context: html, text, full: html, text
• adding lift over to ce11 refs #15209
  
  • src/hg/makeDb/doc/ce10.txt - lines changed 19, context: html, text, full: html, text
  • src/hg/makeDb/doc/ce6.txt - lines changed 18, context: html, text, full: html, text
• added augustusGene liftOver to ce6 and ce10 and in the pushQ refs #15209
  
  • src/hg/makeDb/doc/ce11/initialBuild.txt - lines changed 58, context: html, text, full: html, text
• starting lastz runs refs #15209
  
  • src/hg/makeDb/doc/ce11/lastzRuns.txt - lines changed 59, context: html, text, full: html, text
• adding SGP geneid gene predictions refs #15616
  
  • src/hg/makeDb/doc/bosTau8.txt - lines changed 22, context: html, text, full: html, text
  • src/hg/makeDb/doc/mm10.txt - lines changed 23, context: html, text, full: html, text
  • src/hg/makeDb/doc/rn6.txt - lines changed 21, context: html, text, full: html, text
• adding SGP geneid gene predictions refs #13214
  
  • src/hg/makeDb/doc/hg38/geneid.SGP.genes.txt - lines changed 29, context: html, text, full: html, text
• adding caeAng2 for alignments to ce11 refs #15209
  
  • src/hg/makeDb/trackDb/makefile - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/worm/caeAng2/description.html - lines changed 63, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/worm/caeAng2/gap.html - lines changed 30, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/worm/caeAng2/gold.html - lines changed 33, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/worm/caeAng2/trackDb.ra - lines changed 8, context: html, text, full: html, text
• there may be on TrfPart symlink for a simple assembly refs #15209
  
  • src/hg/utils/automation/doSimpleRepeat.pl - lines changed 1, context: html, text, full: html, text
• v319 preview1 refs #15624
  
  • src/utils/qa/weeklybld/buildEnv.csh - lines changed 2, context: html, text, full: html, text