07769f5e62216c125dc90df08dac7a90402c3fa4
markd
  Mon Jun 22 12:54:40 2015 -0700
add geneId to transmap gene table, with backwards compatibilty for current transmap tracks (RM 14574)

diff --git src/hg/inc/transMapInfo.h src/hg/inc/transMapInfo.h
index 544a69b..00c7214 100644
--- src/hg/inc/transMapInfo.h
+++ src/hg/inc/transMapInfo.h
@@ -1,81 +1,83 @@
 /* transMapInfo.h was originally generated by the autoSql program, which also 
  * generated transMapInfo.c and transMapInfo.sql.  This header links the database and
  * the RAM representation of objects. */
 
 /* Copyright (C) 2008 The Regents of the University of California 
  * See README in this or parent directory for licensing information. */
 
 #ifndef TRANSMAPINFO_H
 #define TRANSMAPINFO_H
 
 #define TRANSMAPINFO_NUM_COLS 5
 
+extern char *transMapInfoCommaSepFieldNames;
+
 enum transMapInfoChainSubset
     {
     transMapInfoUnknown = 0,
     transMapInfoAll = 1,
     transMapInfoSyn = 2,
     transMapInfoRbest = 3,
     };
 struct transMapInfo
 /* genomeDB information about transMap alignments */
     {
     struct transMapInfo *next;  /* Next in singly linked list. */
     char *mappedId;	/* id of mapped alignment */
     char srcDb[17];	/* source db */
     char *srcId;	/* id of source alignment */
     char *mappingId;	/* id of chain used for mapping */
     enum transMapInfoChainSubset chainSubset;	/* chain subset used */
     };
 
 void transMapInfoStaticLoad(char **row, struct transMapInfo *ret);
 /* Load a row from transMapInfo table into ret.  The contents of ret will
  * be replaced at the next call to this function. */
 
 struct transMapInfo *transMapInfoLoad(char **row);
 /* Load a transMapInfo from row fetched with select * from transMapInfo
  * from database.  Dispose of this with transMapInfoFree(). */
 
 struct transMapInfo *transMapInfoLoadAll(char *fileName);
 /* Load all transMapInfo from whitespace-separated file.
  * Dispose of this with transMapInfoFreeList(). */
 
 struct transMapInfo *transMapInfoLoadAllByChar(char *fileName, char chopper);
 /* Load all transMapInfo from chopper separated file.
  * Dispose of this with transMapInfoFreeList(). */
 
 #define transMapInfoLoadAllByTab(a) transMapInfoLoadAllByChar(a, '\t');
 /* Load all transMapInfo from tab separated file.
  * Dispose of this with transMapInfoFreeList(). */
 
 struct transMapInfo *transMapInfoCommaIn(char **pS, struct transMapInfo *ret);
 /* Create a transMapInfo out of a comma separated string. 
  * This will fill in ret if non-null, otherwise will
  * return a new transMapInfo */
 
 void transMapInfoFree(struct transMapInfo **pEl);
 /* Free a single dynamically allocated transMapInfo such as created
  * with transMapInfoLoad(). */
 
 void transMapInfoFreeList(struct transMapInfo **pList);
 /* Free a list of dynamically allocated transMapInfo's */
 
 void transMapInfoOutput(struct transMapInfo *el, FILE *f, char sep, char lastSep);
 /* Print out transMapInfo.  Separate fields with sep. Follow last field with lastSep. */
 
 #define transMapInfoTabOut(el,f) transMapInfoOutput(el,f,'\t','\n');
 /* Print out transMapInfo as a line in a tab-separated file. */
 
 #define transMapInfoCommaOut(el,f) transMapInfoOutput(el,f,',',',');
 /* Print out transMapInfo as a comma separated list including final comma. */
 
 /* -------------------------------- End autoSql Generated Code -------------------------------- */
 
 struct sqlConnection;
 struct transMapInfo *transMapInfoQuery(struct sqlConnection *conn,
                                        char *table, char *mappedId);
 /* load a single transMapInfo object for an mapped id from a table,
  * or error if not found */
 
 #endif /* TRANSMAPINFO_H */