3e72b08b9ce8abd50707e089b269ce9dbf210fe8
angie
  Mon Jun 29 14:54:07 2015 -0700
Updating pubsBlat.as to reflect current pubsBlat table, and adding
pubsBlat2.as to reflect Max's newer schema with more extra fields.
refs #15610

diff --git src/hg/lib/pubsBlat.as src/hg/lib/pubsBlat.as
index 6c04162..ef0643b 100644
--- src/hg/lib/pubsBlat.as
+++ src/hg/lib/pubsBlat.as
@@ -4,27 +4,16 @@
     string chrom;         "chromosome"
     int chromStart;       "start position on chromosome"
     int chromEnd;         "end position on chromosome"
     string name;          "internal articleId, article that matches here"
     int score;            "score of feature"
     char[1] strand;       "strand of feature"
     int thickStart;       "start of exons"
     int thickEnd;         "end of exons"
     int reserved;         "no clue"
     int blockCount;       "number of blocks"
     lstring blockSizes;   "size of blocks"
     lstring chromStarts;  "A comma-separated list of block starts"
     string tSeqTypes;     "comma-seq list of matching sequence db (g=genome, p=protein, c=cDNA)"
     lstring seqIds;       "comma-separated list of matching seqIds"
     lstring seqRanges;    "ranges start-end on sequence that matched, one for each seqId"
-    string publisher;     "publisher of article, for hgTracks feature filter"
-    string pmid;          "PMID of article, for annoGrator output, avoids table join"
-    string doi;           "doi of article, for annoGrator output, avoids table join"
-    string issn;          "issn of journal"
-    string journal;       "name of journal"
-    string title;         "title of article, for genome browser mouseover"
-    string firstAuthor;   "first author family name of article, for genome browser"
-    string year;          "year of article, for genome browser"
-    string impact;        "impact factor of journal, for genome browser coloring, derived from official impact factors: max impact is 25, value is scaled to 0-255"
-    string classes;       "classes assigned to journal article, for genome browser coloring"
-    string locus;         "closest gene symbols, one or two, comma-separated"
     )