File Changes for hiram

v319_preview to v319_preview2 (2015-06-29 to 2015-07-06) v319

• src/hg/makeDb/doc/ce11/initialBuild.txt
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    correct comments on liftOver refs #15209
    
• src/hg/makeDb/doc/ce11/lastzRuns.txt
  • lines changed 59, context: html, text, full: html, text
    running up melHap1 lastz refs #15209
    
  • lines changed 121, context: html, text, full: html, text
    running up caeAng2 and melInc2 lastz refs #15209
    
  • lines changed 71, context: html, text, full: html, text
    finished with melHap1 caeAng2 melInc2 and running up panRed1 refs #15209
    
  • lines changed 58, context: html, text, full: html, text
    running up priPac3 refs #15209
    
  • lines changed 116, context: html, text, full: html, text
    running up cb4 and caePb3 refs #15209
    
  • lines changed 28, context: html, text, full: html, text
    finished up with panRed1 priPac3 cb4 caePb3 refs #15209
    
  • lines changed 57, context: html, text, full: html, text
    done with caeRem4 refs #15209
    
• src/hg/makeDb/doc/worms/caeAng2.txt
  • lines changed 430, context: html, text, full: html, text
    initial browser instructions refs #15209
    
• src/hg/makeDb/doc/worms/melInc2.txt
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    initial browser instructions refs #15209
    
  • lines changed 63, context: html, text, full: html, text
    done with masking refs #15209
    
• src/hg/makeDb/doc/worms/panRed1.txt
  • lines changed 471, context: html, text, full: html, text
    running up windowMasker refs #15209
    
• src/hg/makeDb/doc/worms/priPac3.txt
  • lines changed 463, context: html, text, full: html, text
    running up windowMasker refs #15209
    
• src/hg/makeDb/genbank/etc/genbank.conf
  • lines changed 20, context: html, text, full: html, text
    Added priPac3 - P. pacificus refs #15209
    
• src/hg/makeDb/trackDb/makefile
  • lines changed 1, context: html, text, full: html, text
    adding melInc2 refs #15209
    
  • lines changed 1, context: html, text, full: html, text
    adding priPac3 to the build refs #15209
    
  • lines changed 1, context: html, text, full: html, text
    adding panRed1 Panagrellus redivivus to the build refs #15209
    
  • lines changed 1, context: html, text, full: html, text
    adding haeCon2 to the build refs #15209
    
• src/hg/makeDb/trackDb/worm/caeAng2/trackDb.ra
  • lines changed 5, context: html, text, full: html, text
    adding search rule for gold;
    
• src/hg/makeDb/trackDb/worm/haeCon2/description.html
  • lines changed 63, context: html, text, full: html, text
    adding haeCon2 to the build refs #15209
    
• src/hg/makeDb/trackDb/worm/haeCon2/gap.html
  • lines changed 31, context: html, text, full: html, text
    adding haeCon2 to the build refs #15209
    
• src/hg/makeDb/trackDb/worm/haeCon2/gold.html
  • lines changed 34, context: html, text, full: html, text
    adding haeCon2 to the build refs #15209
    
• src/hg/makeDb/trackDb/worm/haeCon2/trackDb.ra
  • lines changed 8, context: html, text, full: html, text
    adding haeCon2 to the build refs #15209
    
  • lines changed 5, context: html, text, full: html, text
    adding gold table search rule refs #15209
    
• src/hg/makeDb/trackDb/worm/melInc2/description.html
  • lines changed 63, context: html, text, full: html, text
    initial files from makeGenomeDb.pl refs #15209
    
• src/hg/makeDb/trackDb/worm/melInc2/gap.html
  • lines changed 30, context: html, text, full: html, text
    initial files from makeGenomeDb.pl refs #15209
    
• src/hg/makeDb/trackDb/worm/melInc2/gold.html
  • lines changed 34, context: html, text, full: html, text
    initial files from makeGenomeDb.pl refs #15209
    
• src/hg/makeDb/trackDb/worm/melInc2/trackDb.ra
  • lines changed 8, context: html, text, full: html, text
    initial files from makeGenomeDb.pl refs #15209
    
  • lines changed 5, context: html, text, full: html, text
    adding gold table search rule refs #15209
    
• src/hg/makeDb/trackDb/worm/panRed1/description.html
  • lines changed 63, context: html, text, full: html, text
    adding panRed1 Panagrellus redivivus to the build refs #15209
    
• src/hg/makeDb/trackDb/worm/panRed1/gap.html
  • lines changed 30, context: html, text, full: html, text
    adding panRed1 Panagrellus redivivus to the build refs #15209
    
• src/hg/makeDb/trackDb/worm/panRed1/gold.html
  • lines changed 34, context: html, text, full: html, text
    adding panRed1 Panagrellus redivivus to the build refs #15209
    
• src/hg/makeDb/trackDb/worm/panRed1/trackDb.ra
  • lines changed 8, context: html, text, full: html, text
    adding panRed1 Panagrellus redivivus to the build refs #15209
    
  • lines changed 5, context: html, text, full: html, text
    adding gold track search rule refs #15209
    
• src/hg/makeDb/trackDb/worm/priPac3/description.html
  • lines changed 63, context: html, text, full: html, text
    adding priPac3 to the build refs #15209
    
• src/hg/makeDb/trackDb/worm/priPac3/gap.html
  • lines changed 31, context: html, text, full: html, text
    adding priPac3 to the build refs #15209
    
• src/hg/makeDb/trackDb/worm/priPac3/gold.html
  • lines changed 34, context: html, text, full: html, text
    adding priPac3 to the build refs #15209
    
• src/hg/makeDb/trackDb/worm/priPac3/trackDb.ra
  • lines changed 8, context: html, text, full: html, text
    adding priPac3 to the build refs #15209
    
  • lines changed 5, context: html, text, full: html, text
    adding gold table search rule refs #15209
    
• src/hg/utils/automation/doRepeatMasker.pl
  • lines changed 3, context: html, text, full: html, text
    do not always have all classes to construct bigBed refs #15209
    
• src/utils/qa/weeklybld/buildEnv.csh
  • lines changed 2, context: html, text, full: html, text
    v319 preview2 refs #15624