53b27c12e6d7506ba94f8bc9dca10eab1ebd8850 jcasper Tue Jun 30 13:51:32 2015 -0700 Adding CGI menubar to many static pages, refs #15389 diff --git src/hg/htdocs/knownIssues.html src/hg/htdocs/knownIssues.html index 5176e20..65ccd54 100755 --- src/hg/htdocs/knownIssues.html +++ src/hg/htdocs/knownIssues.html @@ -1,221 +1,225 @@ <!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 3.2//EN"> <HTML> <HEAD> <META HTTP-EQUIV="Content-Type" CONTENT="text/html;CHARSET=iso-8859-1"> <META name="description" content="UCSC Genome Browser FAQ"> <META name="keywords" content="genome, genome browser, genome assembly, UCSC, bioinformatics, sequence, gene prediction, SNP, EST, mRNA"> <TITLE>UCSC Genome Bioinformatics: Known Issues</TITLE> <LINK REL="STYLESHEET" HREF="style/HGStyle.css"> </HEAD> <BODY BGCOLOR="FFF9D2" LINK="0000CC" VLINK="#330066" ALINK="#330066"> <A NAME="TOP"></A> <TABLE BORDER=0 CELLPADDING=0 CELLSPACING=0 WIDTH="100%"><TR><TH COLSPAN=2 ALIGN="left"><IMG SRC="images/title.jpg" ALT="UCSC Genome Bioinformatics"></TH></TR> -<TR><TD COLSPAN=2 HEIGHT=40><!--#include virtual="inc/topbar.html"--></TD></TR> +<noscript><div class='noscript'><div class='noscript-inner'><p><b>JavaScript is disabled in your web browser</b></p><p>You must have JavaScript enabled in your web browser to use the Genome Browser</p></div></div></noscript> +<script type='text/javascript' SRC='./js/jquery.js'></script> +<script type='text/javascript' SRC='./js/jquery.plugins.js'></script> +<LINK rel='STYLESHEET' href='./style/nice_menu.css' TYPE='text/css' /> +<TR><TD COLSPAN=2 HEIGHT=40><!--#include virtual="./cgi-bin/hgMenubar"--></TD></TR> <!--Content Table------------------------------------------------------------> <!--outer table is for border purposes--> <TABLE WIDTH="100%" BGCOLOR="#888888" BORDER="0" CELLSPACING="0" CELLPADDING="1"> <TR><TD> <TABLE BGCOLOR="fffee8" WIDTH="100%" BORDER="0" CELLSPACING="0" CELLPADDING="0"> <TR><TD> <TABLE BGCOLOR="D9E4F8" BACKGROUND="images/hr.gif" WIDTH=100%> <TR><TD> <!--cheap trick to get background on row to be continuous--> <TABLE CELLPADDING=0 CELLSPACING=0 MARGIN=0 WIDTH="100%"> <TR><TD ALIGN="left"> <FONT SIZE="4"><b> UCSC Genome Browser Known Issues</b></FONT> </TD></TR> </TABLE> </TD></TR> </TABLE> <TABLE BGCOLOR="fffee8" WIDTH="100%" CELLPADDING=0> <TR><TH HEIGHT=10></TH></TR> <TR><TD WIDTH=10> </TD> <TD> <P> This page lists known open issues and problems in the current release of the UCSC Genome Browser software and data sets. <UL> <LI><A HREF="#issue1">GenBank date off by one month</A> <LI><A HREF="#issue2">EST descriptions missing</A> <LI><A HREF="#issue3">Product name field truncated</A> <LI><A HREF="#issue4">SNPs map to 2 different positions</A> <LI><A HREF="#issue5">Repeatmasking of danRer2 chr1</A> </UL> </TD><TD WIDTH=15></TD> </TR> </TABLE><BR> </TD></TR> </TABLE> </TD></TR> </TABLE> <BR> <!--Content Table------------------------------------------------------------> <A NAME="issue1"></A> <!--outer table is for border purposes--> <TABLE WIDTH="100%" BGCOLOR="#888888" BORDER="0" CELLSPACING="0" CELLPADDING="1"> <TR><TD> <TABLE BGCOLOR="fffee8" WIDTH="100%" BORDER="0" CELLSPACING="0" CELLPADDING="0"> <TR><TD> <TABLE BGCOLOR="D9E4F8" BACKGROUND="images/hr.gif" WIDTH=100%> <TR><TD> <!--cheap trick to get background on row to be continuous--> <TABLE CELLPADDING=0 CELLSPACING=0 MARGIN=0 WIDTH="100%"> <TR><TD ALIGN="left"> <FONT SIZE="4"><b> GenBank date off by one month</b></FONT> </TD></TR> </TABLE> </TD></TR> </TABLE> <TABLE BGCOLOR="fffee8" WIDTH="100%" CELLPADDING=0> <TR><TH HEIGHT=10></TH></TR> <TR><TD WIDTH=10> </TD> <TD> <P> Enter text here. </TD><TD WIDTH=15></TD> </TR> </TABLE><BR> </TD></TR> </TABLE> </TD></TR> </TABLE> <BR> <!--Content Table------------------------------------------------------------> <A NAME="issue2"></A> <!--outer table is for border purposes--> <TABLE WIDTH="100%" BGCOLOR="#888888" BORDER="0" CELLSPACING="0" CELLPADDING="1"> <TR><TD> <TABLE BGCOLOR="fffee8" WIDTH="100%" BORDER="0" CELLSPACING="0" CELLPADDING="0"> <TR><TD> <TABLE BGCOLOR="D9E4F8" BACKGROUND="images/hr.gif" WIDTH=100%> <TR><TD> <!--cheap trick to get background on row to be continuous--> <TABLE CELLPADDING=0 CELLSPACING=0 MARGIN=0 WIDTH="100%"> <TR><TD ALIGN="left"> <FONT SIZE="4"><b> EST descriptions missing</b></FONT> </TD></TR> </TABLE> </TD></TR> </TABLE> <TABLE BGCOLOR="fffee8" WIDTH="100%" CELLPADDING=0> <TR><TH HEIGHT=10></TH></TR> <TR><TD WIDTH=10> </TD> <TD> <P> Enter text here. </TD><TD WIDTH=15></TD> </TR> </TABLE><BR> </TD></TR> </TABLE> </TD></TR> </TABLE> <BR> <!--Content Table------------------------------------------------------------> <A NAME="issue3"></A> <!--outer table is for border purposes--> <TABLE WIDTH="100%" BGCOLOR="#888888" BORDER="0" CELLSPACING="0" CELLPADDING="1"> <TR><TD> <TABLE BGCOLOR="fffee8" WIDTH="100%" BORDER="0" CELLSPACING="0" CELLPADDING="0"> <TR><TD> <TABLE BGCOLOR="D9E4F8" BACKGROUND="images/hr.gif" WIDTH=100%> <TR><TD> <!--cheap trick to get background on row to be continuous--> <TABLE CELLPADDING=0 CELLSPACING=0 MARGIN=0 WIDTH="100%"> <TR><TD ALIGN="left"> <FONT SIZE="4"><b> Product name field truncated</b></FONT> </TD></TR> </TABLE> </TD></TR> </TABLE> <TABLE BGCOLOR="fffee8" WIDTH="100%" CELLPADDING=0> <TR><TH HEIGHT=10></TH></TR> <TR><TD WIDTH=10> </TD> <TD> <P> Enter text here. </TD><TD WIDTH=15></TD> </TR> </TABLE><BR> </TD></TR> </TABLE> </TD></TR> </TABLE> <BR> <!--Content Table------------------------------------------------------------> <A NAME="issue4"></A> <!--outer table is for border purposes--> <TABLE WIDTH="100%" BGCOLOR="#888888" BORDER="0" CELLSPACING="0" CELLPADDING="1"> <TR><TD> <TABLE BGCOLOR="fffee8" WIDTH="100%" BORDER="0" CELLSPACING="0" CELLPADDING="0"> <TR><TD> <TABLE BGCOLOR="D9E4F8" BACKGROUND="images/hr.gif" WIDTH=100%> <TR><TD> <!--cheap trick to get background on row to be continuous--> <TABLE CELLPADDING=0 CELLSPACING=0 MARGIN=0 WIDTH="100%"> <TR><TD ALIGN="left"> <FONT SIZE="4"><b> SNPs map to 2 different positions</b></FONT> </TD></TR> </TABLE> </TD></TR> </TABLE> <TABLE BGCOLOR="fffee8" WIDTH="100%" CELLPADDING=0> <TR><TH HEIGHT=10></TH></TR> <TR><TD WIDTH=10> </TD> <TD> <P> Enter text here. </TD><TD WIDTH=15></TD> </TR> </TABLE><BR> </TD></TR> </TABLE> </TD></TR> </TABLE> <BR> <!--Content Table------------------------------------------------------------> <A NAME="issue5"></A> <!--outer table is for border purposes--> <TABLE WIDTH="100%" BGCOLOR="#888888" BORDER="0" CELLSPACING="0" CELLPADDING="1"> <TR><TD> <TABLE BGCOLOR="fffee8" WIDTH="100%" BORDER="0" CELLSPACING="0" CELLPADDING="0"> <TR><TD> <TABLE BGCOLOR="D9E4F8" BACKGROUND="images/hr.gif" WIDTH=100%> <TR><TD> <!--cheap trick to get background on row to be continuous--> <TABLE CELLPADDING=0 CELLSPACING=0 MARGIN=0 WIDTH="100%"> <TR><TD ALIGN="left"> <FONT SIZE="4"><b> Repeatmasking of danRer2 chr1</b></FONT> </TD></TR> </TABLE> </TD></TR> </TABLE> <TABLE BGCOLOR="fffee8" WIDTH="100%" CELLPADDING=0> <TR><TH HEIGHT=10></TH></TR> <TR><TD WIDTH=10> </TD> <TD> <P> An error was found with the RepeatMasker output for chr1 on the Zebrafish (danRer2) assembly. This resulted in an incomplete masking of the repeats in the <em>chr1.fa</em>. This error has been corrected for the data in the <em>chr1.fa</em> downloads file. However, blastz has not been rerun on chr1, which may result in some inconsistencies. </P> </TD><TD WIDTH=15></TD> </TR> </TABLE><BR> </TD></TR> </TABLE> </TD></TR> </TABLE> </TD><TD WIDTH=15></TD></TR> </TABLE> </BODY></HTML>