abf0bba81d1cee1d1c84bb770ce8099366aa205c galt Mon Jul 27 16:08:54 2015 -0700 fixing typo in help msg for gfClient diff --git src/gfClient/gfClient.c src/gfClient/gfClient.c index 29671a7..95185d3 100644 --- src/gfClient/gfClient.c +++ src/gfClient/gfClient.c @@ -45,31 +45,31 @@ " (note these are needed by the client as well as the server)\n" " in.fa is a fasta format file. May contain multiple records\n" " out.psl is where to put the output\n" "options:\n" " -t=type Database type. Type is one of:\n" " dna - DNA sequence\n" " prot - protein sequence\n" " dnax - DNA sequence translated in six frames to protein\n" " The default is dna.\n" " -q=type Query type. Type is one of:\n" " dna - DNA sequence\n" " rna - RNA sequence\n" " prot - protein sequence\n" " dnax - DNA sequence translated in six frames to protein\n" " rnax - DNA sequence translated in three frames to protein\n" - " -prot Synonymous with -d=prot -q=prot.\n" + " -prot Synonymous with -t=prot -q=prot.\n" " -dots=N Output a dot every N query sequences.\n" " -nohead Suppresses 5-line psl header.\n" " -minScore=N Sets minimum score. This is twice the matches minus the \n" " mismatches minus some sort of gap penalty. Default is 30.\n" " -minIdentity=N Sets minimum sequence identity (in percent). Default is\n" " 90 for nucleotide searches, 25 for protein or translated\n" " protein searches.\n" " -out=type Controls output file format. Type is one of:\n" " psl - Default. Tab-separated format without actual sequence\n" " pslx - Tab-separated format with sequence\n" " axt - blastz-associated axt format\n" " maf - multiz-associated maf format\n" " sim4 - similar to sim4 format\n" " wublast - similar to wublast format\n" " blast - similar to NCBI blast format\n"