All File Changes
v320_preview to v320_preview2 (2015-07-20 to 2015-07-27) v320
- src/hg/hgGene/hgGeneData/Human/hg38/links.ra
- lines changed 6, context: html, text, full: html, text
add link outs to ExonPrimer from hg38 #15656
- src/hg/hgTables/bigBed.c
- lines changed 1, context: html, text, full: html, text
fix a couple of problems where sql tables were assumed #15756
- src/hg/hgTables/identifiers.c
- lines changed 1, context: html, text, full: html, text
fix a couple of problems where sql tables were assumed #15756
- src/hg/hgTables/sumStats.c
- lines changed 1, context: html, text, full: html, text
fix summary stats on assembly hubs #15756
- src/hg/hgTracks/extTools.c
- lines changed 7, context: html, text, full: html, text
adding a $returnUrl option to the extTools.ra file, refs #15113
- src/hg/hgTracks/menu.c
- lines changed 3, context: html, text, full: html, text
Changing menu bar colors, refs #15389
- src/hg/htdocs/goldenPath/help/cutters.html
- lines changed 1, context: html, text, full: html, text
Replacing absolute links in track descriptions with relative links, refs #8231
- src/hg/htdocs/goldenPath/help/oligoMatch.html
- lines changed 1, context: html, text, full: html, text
Replacing absolute links in track descriptions with relative links, refs #8231
- src/hg/htdocs/images/hgTracksHomeIconSprite.png
- lines changed 0, context: html, text, full: html, text
Changing menu bar colors, refs #15389
- src/hg/htdocs/images/homeIconSprite.png
- lines changed 0, context: html, text, full: html, text
Changing menu bar colors, refs #15389
- src/hg/htdocs/style/nice_menu.css
- lines changed 25, context: html, text, full: html, text
Changing menu bar colors, refs #15389
- src/hg/htdocs/training/index.html
- lines changed 2, context: html, text, full: html, text
added new window spawn to UC Davis link and dropped an o from Icahn schoool. per steve code review. refs #15732
- lines changed 1, context: html, text, full: html, text
adding map of training locations past and future and linking to it from index page. refs #15730
- src/hg/htdocs/training/trainingMap.html
- lines changed 9, context: html, text, full: html, text
adding map of training locations past and future and linking to it from index page. refs #15730
- src/hg/inc/jksql.h
- lines changed 13, context: html, text, full: html, text
Fixes RM#15751. Fixes a minor problem with sql string escaping. Also added a new function sqlSafefAppend because it use handy when you need to safely append a little formatted string, but you do not want to be bothered with using dyStrings.
- src/hg/lib/hgFind.c
- lines changed 9, context: html, text, full: html, text
Fixes RM#15751. Fixes a minor problem with sql string escaping. Also added a new function sqlSafefAppend because it use handy when you need to safely append a little formatted string, but you do not want to be bothered with using dyStrings.
- src/hg/lib/jksql.c
- lines changed 19, context: html, text, full: html, text
Fixes RM#15751. Fixes a minor problem with sql string escaping. Also added a new function sqlSafefAppend because it use handy when you need to safely append a little formatted string, but you do not want to be bothered with using dyStrings.
- src/hg/makeDb/doc/caeSp111.txt
- lines changed 5, context: html, text, full: html, text
now has a scientific name refs #15209
- lines changed 2, context: html, text, full: html, text
and the organism/common name updates too refs @15209
- src/hg/makeDb/doc/ce11/lastzRuns.txt
- lines changed 515, context: html, text, full: html, text
done with lastz runs for loaLoa1 ancCey1 triSui1 triSpi1 priExs1 dirImm1 ascSuu1 hetBac1 necAme1 refs #15209
- src/hg/makeDb/doc/hg18.txt
- lines changed 6, context: html, text, full: html, text
Note from Valerie that our hg18.altLocations are valid.
- src/hg/makeDb/doc/hg19.txt
- lines changed 175, context: html, text, full: html, text
mafSnp mode for hg19 100 way
- lines changed 2, context: html, text, full: html, text
Fixed typo in hg19 makedoc; refs #9391
- src/hg/makeDb/doc/worms/ancCey1.txt
- lines changed 68, context: html, text, full: html, text
done with basic tracks refs #15209
- src/hg/makeDb/doc/worms/ascSuu1.txt
- lines changed 46, context: html, text, full: html, text
done with basic tracks refs @15209
- src/hg/makeDb/doc/worms/bruMal2.txt
- lines changed 98, context: html, text, full: html, text
done with basic set of tracks refs #15209
- src/hg/makeDb/doc/worms/dirImm1.txt
- lines changed 36, context: html, text, full: html, text
done with basic tracks refs #15209
- src/hg/makeDb/doc/worms/hetBac1.txt
- lines changed 83, context: html, text, full: html, text
done with basic tracks refs #15209
- src/hg/makeDb/doc/worms/loaLoa1.txt
- lines changed 41, context: html, text, full: html, text
done with basic tracks refs #15209
- lines changed 1, context: html, text, full: html, text
correct name at the top refs #15209
- src/hg/makeDb/doc/worms/necAme1.txt
- lines changed 45, context: html, text, full: html, text
done with basic tracks refs #15209
- src/hg/makeDb/doc/worms/oncVol1.txt
- lines changed 40, context: html, text, full: html, text
done with basic tracks refs #15209
- src/hg/makeDb/doc/worms/priExs1.txt
- lines changed 77, context: html, text, full: html, text
done with basic tracks refs #15209
- src/hg/makeDb/doc/worms/triSpi1.txt
- lines changed 44, context: html, text, full: html, text
done with basic tracks refs #15209
- src/hg/makeDb/doc/worms/triSui1.txt
- lines changed 45, context: html, text, full: html, text
done with basic tracks refs #15209
- src/hg/makeDb/genbank/src/ccds/ccdsMkTables.c
- lines changed 3, context: html, text, full: html, text
some tweaks to CCDS processing (no redmine)
- src/hg/makeDb/genbank/src/ccds/createTables.sql
- lines changed 2, context: html, text, full: html, text
some tweaks to CCDS processing (no redmine)
- src/hg/makeDb/genbank/src/ccds/ncbiSql/createTables.sql
- lines changed 2, context: html, text, full: html, text
some tweaks to CCDS processing (no redmine)
- src/hg/makeDb/trackDb/augustusGene.html
- lines changed 46, context: html, text, full: html, text
Expanding section about training species used when scanning different clades, refs #13088
- lines changed 3, context: html, text, full: html, text
Fixing spelling errors found in CR, refs #15735
- src/hg/makeDb/trackDb/est.html
- lines changed 3, context: html, text, full: html, text
Replacing absolute links in track descriptions with relative links, refs #8231
- src/hg/makeDb/trackDb/est.new.html
- lines changed 3, context: html, text, full: html, text
Replacing absolute links in track descriptions with relative links, refs #8231
- src/hg/makeDb/trackDb/mrna.html
- lines changed 3, context: html, text, full: html, text
Replacing absolute links in track descriptions with relative links, refs #8231
- src/hg/makeDb/trackDb/refGene.html
- lines changed 2, context: html, text, full: html, text
Replacing absolute links in track descriptions with relative links, refs #8231
- src/hg/makeDb/trackDb/refGene.new.html
- lines changed 2, context: html, text, full: html, text
Replacing absolute links in track descriptions with relative links, refs #8231
- src/hg/makeDb/trackDb/trackDb.chainNet.nematode.ra
- lines changed 675, context: html, text, full: html, text
seperate out nematode definitions since there are a number to come refs #15209
- src/hg/makeDb/trackDb/trackDb.chainNet.ra
- lines changed 671, context: html, text, full: html, text
seperate out nematode definitions since there are a number to come refs #15209
- src/hg/makeDb/trackDb/xenoEst.html
- lines changed 2, context: html, text, full: html, text
Replacing absolute links in track descriptions with relative links, refs #8231
- src/hg/makeDb/trackDb/xenoMrna.html
- lines changed 3, context: html, text, full: html, text
Replacing absolute links in track descriptions with relative links, refs #8231
- src/hg/utils/automation/doDbSnpMaskSequence.pl
- lines changed 4, context: html, text, full: html, text
Use use File::Basename as suggested by Hiram. refs #15739
- src/hg/utils/automation/doDbSnpOrthoAlleles.pl
- lines changed 4, context: html, text, full: html, text
Use use File::Basename as suggested by Hiram. refs #15739
- src/hg/utils/genePredToBigGenePred/genePredToBigGenePred.c
- lines changed 2, context: html, text, full: html, text
eom teaks to make genePredToBigGenePred easier to use #15390
- src/utils/qa/weeklybld/buildEnv.csh
- lines changed 3, context: html, text, full: html, text
v320 preview2 refs #15731
- lines changed: 2861
- files changed: 53