1181f2b6dc4ea27bd4990fafc90fe787bc8681de ann Fri Aug 21 13:14:50 2015 -0700 reorderd list of data types: remotes first, then alpha. Added bigGenePred to list of remote data types diff --git src/hg/hgCustom/hgCustom.c src/hg/hgCustom/hgCustom.c index f9afdcd..71a323d 100644 --- src/hg/hgCustom/hgCustom.c +++ src/hg/hgCustom/hgCustom.c @@ -87,56 +87,54 @@ struct customTrack *ctList = NULL; void makeClearButton(char *field) /* UI button that clears a text field */ { char javascript[1024]; safef(javascript, sizeof javascript, "document.mainForm.%s.value = '';", field); cgiMakeOnClickButton(javascript, " Clear "); } void addIntro() /* display overview and help message for "add" screen */ { puts(" Data must be formatted in\n" -" <A TARGET=_BLANK HREF='../FAQ/FAQformat.html#format1'>BED</A>,\n" " <A TARGET=_BLANK HREF='../goldenPath/help/bigBed.html'>bigBed</A>,\n" " <A TARGET=_BLANK HREF='../goldenPath/help/bigGenePred.html'>bigGenePred</A>,\n" -" <A TARGET=_BLANK HREF='../goldenPath/help/bedgraph.html'>bedGraph</A>,\n" -" <A TARGET=_BLANK HREF='../FAQ/FAQformat.html#format3'>GFF</A>,\n" -" <A TARGET=_BLANK HREF='../FAQ/FAQformat.html#format4'>GTF</A>,\n" -" <A TARGET=_BLANK HREF='../goldenPath/help/wiggle.html'>WIG</A>,\n" " <A TARGET=_BLANK HREF='../goldenPath/help/bigWig.html'>bigWig</A>,\n" -" <A TARGET=_BLANK HREF='../FAQ/FAQformat.html#format5'>MAF</A>,\n" " <A TARGET=_BLANK HREF='../goldenPath/help/bam.html'>BAM</A>,\n" -" <A TARGET=_BLANK HREF='../FAQ/FAQformat.html#format1.7'>BED detail</A>,\n" -" <A TARGET=_BLANK HREF='../FAQ/FAQformat.html#format10'>Personal Genome SNP,</A>\n" " <A TARGET=_BLANK HREF='../goldenPath/help/vcf.html'>VCF</A>,\n" +" <A TARGET=_BLANK HREF='../FAQ/FAQformat.html#format1'>BED</A>,\n" +" <A TARGET=_BLANK HREF='../FAQ/FAQformat.html#format1.7'>BED detail</A>,\n" +" <A TARGET=_BLANK HREF='../goldenPath/help/bedgraph.html'>bedGraph</A>,\n" " <A TARGET=_BLANK HREF='../FAQ/FAQformat.html#format13'>broadPeak</A>,\n" +" <A TARGET=_BLANK HREF='../FAQ/FAQformat.html#format3'>GFF</A>,\n" +" <A TARGET=_BLANK HREF='../FAQ/FAQformat.html#format4'>GTF</A>,\n" +" <A TARGET=_BLANK HREF='../FAQ/FAQformat.html#format5'>MAF</A>,\n" " <A TARGET=_BLANK HREF='../FAQ/FAQformat.html#format12'>narrowPeak</A>,\n" -" or <A TARGET=_BLANK HREF='../FAQ/FAQformat.html#format2'>PSL</A>\n" +" <A TARGET=_BLANK HREF='../FAQ/FAQformat.html#format10'>Personal Genome SNP,</A>\n" +" <A TARGET=_BLANK HREF='../FAQ/FAQformat.html#format2'>PSL</A>,\n" +" or <A TARGET=_BLANK HREF='../goldenPath/help/wiggle.html'>WIG</A>\n" " formats. To configure the display, set\n" " <A TARGET=_BLANK HREF='../goldenPath/help/customTrack.html#TRACK'>track</A>\n" " and" " <A TARGET=_BLANK HREF='../goldenPath/help/customTrack.html#BROWSER'>browser</A>\n" " line attributes as described in the \n" " <A TARGET=_BLANK HREF='../goldenPath/help/customTrack.html'>User's Guide</A>.\n" -" Data in the bigBed, bigWig, BAM and VCF formats can be provided via only a URL or embedded in a track\n" +" Data in the bigBed, bigWig, bigGenePred, BAM and VCF formats can be provided via only a URL or embedded in a track\n" " line in the box below.\n" -" Publicly available custom tracks are listed\n" -" <A HREF='../goldenPath/customTracks/custTracks.html'>here</A>.\n" " Examples are\n" " <A TARGET=_BLANK HREF='../goldenPath/help/customTrack.html#EXAMPLE1'>here</A>.\n" ); } void addCustomForm(struct customTrack *ct, char *err) /* display UI for adding custom tracks by URL or pasting data */ { char *dataUrl = NULL; char buf[1024]; boolean gotClade = FALSE; boolean isUpdateForm = FALSE; if (ct) {