File Changes for hiram

v321_preview2 to v321_base (2015-08-17 to 2015-08-24) v321

• src/hg/htdocs/images/Brugia_malayi.jpg
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    photo from CDC refs #15209
    
• src/hg/htdocs/images/Bursaphelenchus_xylophilus.jpg
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    adding photo for burXyl1 from USDA photo refs #15209
    
• src/hg/htdocs/images/Haemonchus_contortus.jpg
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    adding image for haeCon from CSIRO refs #15209
    
• src/hg/htdocs/images/Meloidogyne_incognita.jpg
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    adding photo for melInc from USDA images refs #15209
    
• src/hg/htdocs/images/Panagrellus_redivivus.jpg
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    photo for panRed1 from wikimedia commons refs #15209
    
• src/hg/htdocs/images/Pristionchus_exspectatus.jpg
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    adding Pristionchus photo from Max Planck Institute refs #15209
    
• src/hg/inc/versionInfo.h
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    New version number v321
    
• src/hg/makeDb/doc/hg38/hg38.txt
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    update cloneEndbadEnds table load for BAC ends refs #13713
    
• src/hg/makeDb/doc/hg38/lastzRuns.txt
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    completed lastz runs for vicPac2 orcOrc1 speTri2 loxAfr3 hetGla2 felCat8 musFur1 dasNov3 panHod1 capHir1 triMan1 conCri1 echTel2 micMur2 refs #14560
    
• src/hg/makeDb/doc/hg38/stsMap.txt
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    done with stsMap track build refs #15524
    
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    fix leaked in hg19 results into stsMap refs #15524
    
• src/hg/makeDb/doc/worms/ascSuu1.txt
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    done with genbank run refs #15209
    
• src/hg/makeDb/doc/worms/bruMal2.txt
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    rerun assembly with wolbachia sequence and add correct photo refs #15209
    
• src/hg/makeDb/doc/worms/haeCon2.txt
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    adding correct photo from CSIRO refs #15209
    
• src/hg/makeDb/doc/worms/lastz.ancCey1.txt
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    collected make doc from lastz runs refs #15209
    
• src/hg/makeDb/doc/worms/lastz.ascSuu1.txt
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    collected make doc from lastz runs refs #15209
    
• src/hg/makeDb/doc/worms/lastz.bruMal2.txt
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    collected make doc from lastz runs refs #15209
    
• src/hg/makeDb/doc/worms/lastz.burXyl1.txt
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    collected make doc from lastz runs refs #15209
    
• src/hg/makeDb/doc/worms/lastz.caeAng2.txt
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    collected make doc from lastz runs refs #15209
    
• src/hg/makeDb/doc/worms/lastz.caeJap4.txt
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    collected make doc from lastz runs refs #15209
    
• src/hg/makeDb/doc/worms/lastz.caePb3.txt
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    collected make doc from lastz runs refs #15209
    
• src/hg/makeDb/doc/worms/lastz.caeRem4.txt
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    collected make doc from lastz runs refs #15209
    
• src/hg/makeDb/doc/worms/lastz.caeSp111.txt
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    collected make doc from lastz runs refs #15209
    
• src/hg/makeDb/doc/worms/lastz.caeSp51.txt
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    collected make doc from lastz runs refs #15209
    
• src/hg/makeDb/doc/worms/lastz.cb4.txt
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    collected make doc from lastz runs refs #15209
    
• src/hg/makeDb/doc/worms/lastz.dirImm1.txt
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    collected make doc from lastz runs refs #15209
    
• src/hg/makeDb/doc/worms/lastz.haeCon2.txt
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    collected make doc from lastz runs refs #15209
    
• src/hg/makeDb/doc/worms/lastz.hetBac1.txt
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    collected make doc from lastz runs refs #15209
    
• src/hg/makeDb/doc/worms/lastz.loaLoa1.txt
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    collected make doc from lastz runs refs #15209
    
• src/hg/makeDb/doc/worms/lastz.melHap1.txt
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    collected make doc from lastz runs refs #15209
    
• src/hg/makeDb/doc/worms/lastz.melInc2.txt
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    collected make doc from lastz runs refs #15209
    
• src/hg/makeDb/doc/worms/lastz.necAme1.txt
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    collected make doc from lastz runs refs #15209
    
• src/hg/makeDb/doc/worms/lastz.oncVol1.txt
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    collected make doc from lastz runs refs #15209
    
• src/hg/makeDb/doc/worms/lastz.panRed1.txt
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    collected make doc from lastz runs refs #15209
    
• src/hg/makeDb/doc/worms/lastz.priExs1.txt
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    collected make doc from lastz runs refs #15209
    
• src/hg/makeDb/doc/worms/lastz.priPac3.txt
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    collected make doc from lastz runs refs #15209
    
• src/hg/makeDb/doc/worms/lastz.strRat2.txt
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    collected make doc from lastz runs refs #15209
    
• src/hg/makeDb/doc/worms/lastz.triSpi1.txt
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    collected make doc from lastz runs refs #15209
    
• src/hg/makeDb/doc/worms/panRed1.txt
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    adding correct photo from WikiMedia Commons refs #15209
    
• src/hg/makeDb/doc/worms/priExs1.txt
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    adding a Pristionchus photo from Max Planck Institute refs #15209
    
• src/hg/makeDb/genbank/etc/align.dbs
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    Added ascSuu1 - Ascaris suum/Pig roundworm refs #15209
    
• src/hg/makeDb/genbank/etc/genbank.conf
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    Added ascSuu1 - Pig roundworm/Ascaris suum refs #15209
    
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    fixup ascSuu1 definitions for better results refs #15209
    
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    Added priExs1 - P. exspectatus refs #15209
    
• src/hg/makeDb/genbank/etc/hgwdev.dbs
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    Added ascSuu1 - Ascaris suum/Pig roundworm refs #15209
    
• src/hg/makeDb/genbank/src/lib/gbGenome.c
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    Added ascSuu1 - Pig roundworm/Ascaris suum refs #15209
    
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    Added priExsNames - P. exspectatus refs #15209
    
• src/hg/makeDb/trackDb/worm/bruMal2/description.html
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    updated photo refs #15209
    
• src/hg/makeDb/trackDb/worm/burXyl1/description.html
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    adding correct photo refs #15209
    
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    correct image size in the href refs #15209
    
• src/hg/makeDb/trackDb/worm/haeCon1/description.html
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    correct photo from CSIRO refs #15209
    
• src/hg/makeDb/trackDb/worm/haeCon2/description.html
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    correct photo from CSIRO refs #15209
    
• src/hg/makeDb/trackDb/worm/melInc1/description.html
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    correct photo from USDA refs #15209
    
• src/hg/makeDb/trackDb/worm/melInc2/description.html
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    correct photo from USDA refs #15209
    
• src/hg/makeDb/trackDb/worm/ncbiGenes.html
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    adding NCBI gene track definition refs #15209
    
• src/hg/makeDb/trackDb/worm/panRed1/description.html
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    correct photo from WikiMedia Commons refs #15209
    
• src/hg/makeDb/trackDb/worm/priExs1/description.html
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    adding photo from Max Planck Institute refsw #15209
    
• src/hg/makeDb/trackDb/worm/trackDb.chainNet.ra
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    adding track chainNets for hetBac1 ancCey1 necAme1 ascSuu1 priExs1 and loaLoa1 refs #15209
    
• src/hg/makeDb/trackDb/worm/trackDb.ra
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    adding NCBI gene track definition refs #15209
    
• src/hg/mouseStuff/axtChain/axtChain.c
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    better error messages instead of SegFault and can find no use for seqList refs #15899
    
• src/hg/pslFilterPrimers/pslFilterPrimers.c
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    bring up to spec for hg38 stsMap build refs #15524
    
• src/hg/stsMarkers/combineSeqPrimerPos
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    update to correct /usr/bin/env perl invocation line refs #15524
    
• src/hg/stsMarkers/findAccession.pl
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    fixup to naming scheme of hg38 refs #15524
    
• src/utils/qa/weeklybld/buildEnv.csh
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    v321 final build refs #15836