47beb398a400ba09b5c9b101d744268b1701e84d angie Mon Aug 3 16:44:18 2015 -0700 Doh, wgEncodeRegDnaseClusteredV3 is out on the RR and wgEncodeRegDnaseClusteredV2 is not, so hgVai wasn't showing a DNase option. TODO: use the new columns in wgEncodeRegDnaseClusteredV3 to support filtering by cell type. diff --git src/hg/hgVai/hgVai.c src/hg/hgVai/hgVai.c index 1ce2da0..e0c731e 100644 --- src/hg/hgVai/hgVai.c +++ src/hg/hgVai/hgVai.c @@ -726,31 +726,31 @@ { if (!gotSnp) return; startCollapsibleSection("dbSnp", "Known variation", TRUE); cartMakeCheckBox(cart, "hgva_rsId", TRUE); printf("Include <A HREF='http://www.ncbi.nlm.nih.gov/projects/SNP/' TARGET=_BLANK>dbSNP</A> " "rs# ID if one exists<BR>\n"); puts("<BR>"); endCollapsibleSection(); } boolean isRegulatoryTrack(struct trackDb *tdb, void *filterData) /* For now, just look for a couple specific tracks by tableName. */ { //#*** NEED METADATA -return (sameString("wgEncodeRegDnaseClusteredV2", tdb->table) || +return (sameString("wgEncodeRegDnaseClusteredV3", tdb->table) || sameString("wgEncodeRegTfbsClusteredV3", tdb->table)); } struct slRef *findRegulatoryTracks() /* Look for the very limited set of Regulation tracks that hgVai offers. */ { struct slRef *regTrackRefList = NULL; tdbFilterGroupTrack(fullTrackList, fullGroupList, isRegulatoryTrack, NULL, NULL, ®TrackRefList); return regTrackRefList; } void selectRegulatory() /* If trackRefList is non-NULL, make a section with a checkbox for each track, * labelled with longLabel, and optionally some filtering options. */