106a024634e31199c28410a130e38662eec3b668 braney Tue Aug 4 12:24:58 2015 -0700 small bigPsl fix #14241 diff --git src/hg/hgc/hgc.c src/hg/hgc/hgc.c index 4fa7c97..7829e9d 100644 --- src/hg/hgc/hgc.c +++ src/hg/hgc/hgc.c @@ -2863,31 +2863,31 @@ /* Handle click in big psl track. */ { struct psl* pslList; char *fileName = bbiNameFromSettingOrTable(tdb, conn, tdb->table); struct bbiFile *bbi = bigBedFileOpen(fileName); struct lm *lm = lmInit(0); int ivStart = start, ivEnd = end; if (start == end) { // item is an insertion; expand the search range from 0 bases to 2 so we catch it: ivStart = max(0, start-1); ivEnd++; } struct bigBedInterval *bbList = bigBedIntervalQuery(bbi, seqName, ivStart, ivEnd, 0, lm); -pslList = pslFromBigPsl(seqName, bbList, hChromSize(database, seqName), NULL); +pslList = pslFromBigPsl(seqName, bbList, hChromSize(database, seqName), NULL, NULL); /* check if there is an alignment available for this sequence. This checks * both genbank sequences and other sequences in the seq table. If so, * set it up so they can click through to the alignment. */ if ( 1) //hGenBankHaveSeq(database, item, NULL)) { printf("