File Changes for hiram

v320_base to v321_preview (2015-08-03 to 2015-08-21) v321

• src/hg/lib/ensGtp.sql
  • lines changed 2, context: html, text, full: html, text
    ensGene names can be up to 21 characters refs #15796
    
  • lines changed 2, context: html, text, full: html, text
    ensGene names can be up to 21 characters refs #15796
    
• src/hg/makeDb/doc/ci3/initialBuild.txt
  • lines changed 648, context: html, text, full: html, text
    adding ci3 to correspond with Ensembl v81 release refs #15796
    
• src/hg/makeDb/doc/ci3/ucscCompositeAgp.pl
  • lines changed 62, context: html, text, full: html, text
    adding ci3 to correspond with Ensembl v81 release refs #15796
    
• src/hg/makeDb/doc/ci3/unplaced.pl
  • lines changed 48, context: html, text, full: html, text
    adding ci3 to correspond with Ensembl v81 release refs #15796
    
• src/hg/makeDb/trackDb/makefile
  • lines changed 1, context: html, text, full: html, text
    adding ci3 to match Ensembl releases refs #15796
    
• src/hg/makeDb/trackDb/squirt/ci3/description.html
  • lines changed 63, context: html, text, full: html, text
    adding ci3 to match Ensembl releases refs #15796
    
• src/hg/makeDb/trackDb/squirt/ci3/gap.html
  • lines changed 30, context: html, text, full: html, text
    adding ci3 to match Ensembl releases refs #15796
    
• src/hg/makeDb/trackDb/squirt/ci3/gold.html
  • lines changed 34, context: html, text, full: html, text
    adding ci3 to match Ensembl releases refs #15796
    
• src/hg/makeDb/trackDb/squirt/ci3/trackDb.ra
  • lines changed 8, context: html, text, full: html, text
    adding ci3 to match Ensembl releases refs #15796
    
  • lines changed 5, context: html, text, full: html, text
    adding search rule for gold table refs #15796
    
• src/hg/utils/automation/EnsGeneAutomate.pm
  • lines changed 3, context: html, text, full: html, text
    actually on chlSab2 instead of chlSab1 refs #15796
    
  • lines changed 3, context: html, text, full: html, text
    actually dm6 in v81 instead of dm3 refs #15796
    
• src/hg/utils/automation/doEnsGeneUpdate.pl
  • lines changed 4, context: html, text, full: html, text
    now using -includeVersion for gtfToGenePred and subsequent correct name matching from gene to protein refs #15796
    
• src/hg/utils/automation/findEnsFtpNames.sh
  • lines changed 3, context: html, text, full: html, text
    more correct parsing of FTP site listing refs #15796
    
• src/hg/utils/automation/makeGenomeDb.pl
  • lines changed 1, context: html, text, full: html, text
    adding ci3 to match Ensembl releases refs #15796
    
• src/utils/qa/weeklybld/buildEnv.csh
  • lines changed 2, context: html, text, full: html, text
    v321 preview1 refs #15836
    
• src/utils/qa/weeklybld/cherryPickCommits.csh
  • lines changed 1, context: html, text, full: html, text
    updated email addresses to proper at soe.ucsc.edu refs #15731
    
• src/utils/qa/weeklybld/doNewBranch.csh
  • lines changed 1, context: html, text, full: html, text
    updated email addresses to proper at soe.ucsc.edu refs #15731
    
• src/utils/qa/weeklybld/doSearchRobot.csh
  • lines changed 2, context: html, text, full: html, text
    updated email addresses to proper at soe.ucsc.edu refs #15731
    
• src/utils/qa/weeklybld/moveBranchTag.csh
  • lines changed 1, context: html, text, full: html, text
    updated email addresses to proper at soe.ucsc.edu refs #15731
    
• src/utils/qa/weeklybld/patchBranch.csh
  • lines changed 1, context: html, text, full: html, text
    updated email addresses to proper at soe.ucsc.edu refs #15731
    
• src/utils/qa/weeklybld/revertCommits.csh
  • lines changed 1, context: html, text, full: html, text
    updated email addresses to proper at soe.ucsc.edu refs #15731