Commits for angie

v321_preview to v321_preview2 (2015-08-10 to 2015-08-17) v321

• Work around some hgcentraltest genome values that unintentionally include extra whitespace.
  
  • src/hg/lib/cartJson.c - lines changed 2, context: html, text, full: html, text
• Use isnan instead of comparing to NAN, which does not work!
  
  • src/lib/annoGrateWig.c - lines changed 5, context: html, text, full: html, text
• Moved averaging of wiggle values back from annoFormatTab to annoGrateWig,
  so that it can be done properly across multiple regions with data.
  A user was trying to get average GC over 1MB regions, but averages of
  smaller subregions were returned instead.
  refs #15834
  
  • src/hg/hgVarAnnogrator/hgVarAnnogrator.c - lines changed 1, context: html, text, full: html, text
  • src/hg/inc/annoGrateWigDb.h - lines changed 3, context: html, text, full: html, text
  • src/hg/lib/annoFormatVep.c - lines changed 29, context: html, text, full: html, text
  • src/hg/lib/annoGrateWigDb.c - lines changed 5, context: html, text, full: html, text
  • src/hg/lib/annoStreamWig.c - lines changed 2, context: html, text, full: html, text
  • src/hg/lib/hAnno.c - lines changed 3, context: html, text, full: html, text
  • src/hg/lib/tests/annoGratorTester.c - lines changed 8, context: html, text, full: html, text
  • src/inc/annoGrateWig.h - lines changed 12, context: html, text, full: html, text
  • src/inc/annoRow.h - lines changed 13, context: html, text, full: html, text
  • src/lib/annoFormatTab.c - lines changed 72, context: html, text, full: html, text
  • src/lib/annoGrateWig.c - lines changed 105, context: html, text, full: html, text
  • src/lib/annoRow.c - lines changed 25, context: html, text, full: html, text
  • src/lib/annoStreamBigWig.c - lines changed 4, context: html, text, full: html, text
• Fixing corner-case that caused the last item(s) to be lost when merge-sorting
  large-bin items and all items are in large bins.
  fixes #15867
  
  • src/hg/lib/annoStreamDb.c - lines changed 2, context: html, text, full: html, text
• Oops, need to include maf along with wigMaf in order to exclude MAF custom tracks.
  fixes #15857
  
  • src/hg/js/model/hgIntegrator/hgIntegratorModel.js - lines changed 1, context: html, text, full: html, text
• Disabling pop-up configuration for exacVariants subtrack because the js pop-up config code
  mangles the cart's multishad & value of checkbox group items.
  refs #14379, #15873
  
  • src/hg/makeDb/trackDb/human/hg19/trackDb.ra - lines changed 1, context: html, text, full: html, text