File Changes for galt

v321_preview to v321_preview2 (2015-08-10 to 2015-08-17) v321

• src/hg/hgsqlLocal/hgsqlLocal.c
  • lines changed 41, context: html, text, full: html, text
    Cleaning up by removing hgsqlLocal and hgsqldumpLocal and references to them. These are obsolete both because Jing says they are not used by Cancer browser anymore, not does our documentation refer to it, nor do the makefiles and scripts actually work anymore, and finally because hgsql now has -profile=localDb option. Jing says it is OK to nuke this old junk. Of course it will live in history as it should.
    
• src/hg/hgsqlLocal/makefile
  • lines changed 3, context: html, text, full: html, text
    Cleaning up by removing hgsqlLocal and hgsqldumpLocal and references to them. These are obsolete both because Jing says they are not used by Cancer browser anymore, not does our documentation refer to it, nor do the makefiles and scripts actually work anymore, and finally because hgsql now has -profile=localDb option. Jing says it is OK to nuke this old junk. Of course it will live in history as it should.
    
• src/hg/hgsqlTableDate/hgsqlTableDate.c
  • lines changed 2, context: html, text, full: html, text
    trivial cleanup to hgsqlTableDate
    
• src/hg/hgsqldumpLocal/hgsqldumpLocal.c
  • lines changed 39, context: html, text, full: html, text
    Cleaning up by removing hgsqlLocal and hgsqldumpLocal and references to them. These are obsolete both because Jing says they are not used by Cancer browser anymore, not does our documentation refer to it, nor do the makefiles and scripts actually work anymore, and finally because hgsql now has -profile=localDb option. Jing says it is OK to nuke this old junk. Of course it will live in history as it should.
    
• src/hg/hgsqldumpLocal/makefile
  • lines changed 3, context: html, text, full: html, text
    Cleaning up by removing hgsqlLocal and hgsqldumpLocal and references to them. These are obsolete both because Jing says they are not used by Cancer browser anymore, not does our documentation refer to it, nor do the makefiles and scripts actually work anymore, and finally because hgsql now has -profile=localDb option. Jing says it is OK to nuke this old junk. Of course it will live in history as it should.
    
• src/hg/lib/jksql.c
  • lines changed 6, context: html, text, full: html, text
    oops compile-time mysql version checking
    
• src/hg/lib/sqlProg.c
  • lines changed 2, context: html, text, full: html, text
    cleaning up commented lines from unused vars
    
• src/hg/makeDb/trackDb/buildTrix
  • lines changed 4, context: html, text, full: html, text
    Cleaning up by removing hgsqlLocal and hgsqldumpLocal and references to them. These are obsolete both because Jing says they are not used by Cancer browser anymore, not does our documentation refer to it, nor do the makefiles and scripts actually work anymore, and finally because hgsql now has -profile=localDb option. Jing says it is OK to nuke this old junk. Of course it will live in history as it should.
    
• src/hg/makeDb/trackDb/checkMetaDb
  • lines changed 4, context: html, text, full: html, text
    Cleaning up by removing hgsqlLocal and hgsqldumpLocal and references to them. These are obsolete both because Jing says they are not used by Cancer browser anymore, not does our documentation refer to it, nor do the makefiles and scripts actually work anymore, and finally because hgsql now has -profile=localDb option. Jing says it is OK to nuke this old junk. Of course it will live in history as it should.
    
• src/hg/makeDb/trackDb/loadTracks
  • lines changed 11, context: html, text, full: html, text
    Cleaning up by removing hgsqlLocal and hgsqldumpLocal and references to them. These are obsolete both because Jing says they are not used by Cancer browser anymore, not does our documentation refer to it, nor do the makefiles and scripts actually work anymore, and finally because hgsql now has -profile=localDb option. Jing says it is OK to nuke this old junk. Of course it will live in history as it should.
    
• src/hg/makeDb/trackDb/makeMetaDb
  • lines changed 4, context: html, text, full: html, text
    Cleaning up by removing hgsqlLocal and hgsqldumpLocal and references to them. These are obsolete both because Jing says they are not used by Cancer browser anymore, not does our documentation refer to it, nor do the makefiles and scripts actually work anymore, and finally because hgsql now has -profile=localDb option. Jing says it is OK to nuke this old junk. Of course it will live in history as it should.
    
• src/hg/makeDb/trackDb/makeTrixLinks
  • lines changed 4, context: html, text, full: html, text
    Cleaning up by removing hgsqlLocal and hgsqldumpLocal and references to them. These are obsolete both because Jing says they are not used by Cancer browser anymore, not does our documentation refer to it, nor do the makefiles and scripts actually work anymore, and finally because hgsql now has -profile=localDb option. Jing says it is OK to nuke this old junk. Of course it will live in history as it should.
    
• src/hg/makeDb/trackDb/makefile
  • lines changed 4, context: html, text, full: html, text
    Cleaning up by removing hgsqlLocal and hgsqldumpLocal and references to them. These are obsolete both because Jing says they are not used by Cancer browser anymore, not does our documentation refer to it, nor do the makefiles and scripts actually work anymore, and finally because hgsql now has -profile=localDb option. Jing says it is OK to nuke this old junk. Of course it will live in history as it should.
    
• src/hg/makefile
  • lines changed 2, context: html, text, full: html, text
    Cleaning up by removing hgsqlLocal and hgsqldumpLocal and references to them. These are obsolete both because Jing says they are not used by Cancer browser anymore, not does our documentation refer to it, nor do the makefiles and scripts actually work anymore, and finally because hgsql now has -profile=localDb option. Jing says it is OK to nuke this old junk. Of course it will live in history as it should.
    
• src/inc/common.mk
  • lines changed 1, context: html, text, full: html, text
    This makes it easier to include the kent code from outside the tree.
    
• src/product/README.mysql.setup
  • lines changed 4, context: html, text, full: html, text
    documenting a new mysql5.7 option to require all connections to be encrypted. Also fixed a couple of errors noticed in the text regarding profile config.
    
• src/product/ex.hg.conf
  • lines changed 2, context: html, text, full: html, text
    Fixed a couple of errors noticed in the text regarding profile config.
    
• src/userApps/fetchKentSource.sh
  • lines changed 2, context: html, text, full: html, text
    Cleaning up by removing hgsqlLocal and hgsqldumpLocal and references to them. These are obsolete both because Jing says they are not used by Cancer browser anymore, not does our documentation refer to it, nor do the makefiles and scripts actually work anymore, and finally because hgsql now has -profile=localDb option. Jing says it is OK to nuke this old junk. Of course it will live in history as it should.