4923efad624a61517192e1e7d52bff9270f28771
kent
  Thu May 21 11:59:17 2015 -0700
Bumping version number

diff --git src/blat/version.doc src/blat/version.doc
index 71cae83..e98f1cb 100644
--- src/blat/version.doc
+++ src/blat/version.doc
@@ -1,16 +1,20 @@
 36:
+     o (in 36x1) Fixed problem with -fastMap option that made it put in gaps in the
+       allignment sometimes when a short mismatch would be a better choice.
+
+36:
      o (in 35x1) added repMatch default values for tileSizes 16 to 18 in genoFind.c
 
 35:
      o (in 34x1) Making total query output reporting a 64 bit number to avoid 
        overflow when people using more than 4 gig of query sequence.
      o (in 34x2) Fixed -out=blast to use +/- instead of -/+ for non-translated.
      o (in 34x3) Fixed -minScore, filter was not working when over half query-size.
      o (in 34x4) Made it convert u's to t's for RNA sequence stuff.
      o (in 34x5) Made gfServer calculate repMatch based on stepSize/tileSize combination the way blat does
        rather than just being good for stepSize 11.
      o (in 34x6) Fixed negative strand pcr psl output
      o (in 34x7) Made it check and error out if the same name is reused in the target database.
      o (in 34x8) Truncate in output PCR primers that dangle off target chrom ends.
      o (in 34x9) If -fastMap is used, check that query sizes do not exceed MAXSINGLEPIECESIZE.
      o (in 34x10) Added IP-logging option to gfServer.