Commits for angie

v322_preview2 to v322_base (2015-09-07 to 2015-09-14) v322

• Oops, forgot to use the previously selected CGI as the form's initial action.
  refs #15517
  
  • src/hg/hgCustom/hgCustom.c - lines changed 5, context: html, text, full: html, text
• Hooked up hgIntegrator to hgIntegratorHelp.html in menuBar's Help menu (thanks Donna for noticing it was missing!).
  
  • src/hg/lib/web.c - lines changed 5, context: html, text, full: html, text
• Re-ran snp144 pipeline after dbSNP re-dumped their mappings to alt haplo sequences
  after Sarah Hunt from EBI noticed that many were missing.
  refs #15493
  
  • src/hg/makeDb/doc/hg19.txt - lines changed 94, context: html, text, full: html, text
  • src/hg/makeDb/doc/hg38/variation.txt - lines changed 125, context: html, text, full: html, text
  • src/hg/utils/automation/doDbSnp.pl - lines changed 1, context: html, text, full: html, text
  • src/hg/utils/automation/doDbSnpMaskSequence.pl - lines changed 1, context: html, text, full: html, text
• If the current table doesn't have hti, getIdField tries to get hti for
  the current track -- except that's a problem when the track is a composite
  track yet has a type for which we expect to have a bigDataFileOrUrl.
  So if the current track is a composite, don't try.
  Test case: Table Browser, hg19, group = Variation, track = 1000G Ph3 Accsbl;
  before fix, page fails trying to query the non-existent table for composite.
  
  • src/hg/hgTables/hgTables.c - lines changed 1, context: html, text, full: html, text