6864338d4f83f97c81883134a90fa051b55e1462 donnak Mon Sep 14 01:01:19 2015 -0700 Added draft for hg38 default announcement. diff --git src/hg/htdocs/indexNews.html src/hg/htdocs/indexNews.html index 7cbee33..935589a 100755 --- src/hg/htdocs/indexNews.html +++ src/hg/htdocs/indexNews.html @@ -1,121 +1,131 @@

News

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+ 14 September 2015 — + Human Genome Browser default changed to GRCh38/hg38 +

+ In conjunction with the release of the new 100-species Conservation track on the + hg38/GRCh38 human assembly, we have changed the default human browser on our website from + hg19 to hg38. In most cases, if you are currently using the hg19 (or older) browser, the + Genome Browser will continue to display that assembly for you when you start it up. + However, there are circumstances in which the assembly may switch to the newer version; + for instance, if you reset your browser defaults. If you find yourself in a situation + where some of your favorite browser tracks have "disappeared", you may want to check + that you're viewing the right assembly. +

+ In upcoming months, we will continue our efforts to expand the annotation track set + on the hg38 browser to include many of the tracks present on previous human assemblies. In cases + where it makes sense, data may be simply "lifted" from hg19 using migration + tools. However, in many instances, we must rely on our data providers to generate new versions of + their data on the latest assembly. We'll publish these data sets as they become available. +

+ For a summary of the new features in the GRCh38 assembly, see the + overview we published in March 2014. +

+ + +

10 September 2015 — 100 Species Conservation Track now available on GRCh38/hg38

We are pleased to announce the release of a new Conservation track based on the human (GRCh38/hg38) assembly. This track shows multiple alignments of 100 vertebrate species and measurements of evolutionary conservation using two methods (phastCons and phyloP) from the PHAST package for all species. The multiple alignments were generated using multiz and other tools in the UCSC/Penn State Bioinformatics comparative genomics alignment pipeline. Conserved elements identified by phastCons are also displayed in this track. For more details, visit the track description page.

We would like to thank Hiram Clawson and Jonathan Casper for their efforts in creating this track.

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- 12 August 2015 — - New blog post: How to share your UCSC screenthoughts -

- Do you want to save your UCSC Browser screenthoughts, or share them with a colleague, - or make a slide for a talk, or publish them in a paper? Saving the state of your screen - can take two forms: static or dynamic. You can snap and save a picture of the screen, - or you can share a link to an active Genome Browser. We talk about both approaches - here - and discuss some of the advantages and pitfalls of each. -

12 August 2015 — - New blog post: How to share your UCSC screenthoughts. : + New blog post: How to share your UCSC screenthoughts: We talk about saving static images and dynamic Browser sessions in a new blog post, and discuss some of the advantages and pitfalls of each. Read more.

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29 June 2015 — GENCODE Genes Now Default Gene Set on the Human (GRCh38/hg38) Assembly: In a move towards standardizing on a common gene set within the bioinformatics community, UCSC has made the decision to adopt the GENCODE set of gene models as our default gene set on the human genome assembly. Read more.

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- 26 June 2015 — - New Bonobo (panPan1) Assembly Now Available in the Genome Browser: - - We are pleased to announce the release of a Genome Browser for the May 2012 - assembly of bonobo, Pan paniscus (Max-Planck Institute panpan1, UCSC - version panPan1). - Read more. -