File Changes for angie

v322_preview to v322_preview2 (2015-08-31 to 2015-09-07) v322

• src/hg/hgTracks/extTools.c
  • lines changed 8, context: html, text, full: html, text
    Check whether local file "extTools.ra" exists before calling printExtMenuData and showing the keyboard shortcuts for it.
    
• src/hg/hgTracks/extTools.h
  • lines changed 3, context: html, text, full: html, text
    Check whether local file "extTools.ra" exists before calling printExtMenuData and showing the keyboard shortcuts for it.
    
• src/hg/hgTracks/hgTracks.c
  • lines changed 9, context: html, text, full: html, text
    Check whether local file "extTools.ra" exists before calling printExtMenuData and showing the keyboard shortcuts for it.
    
• src/hg/hgTracks/simpleTracks.c
  • lines changed 30, context: html, text, full: html, text
    Look for trackDbSetting "trackHandler" in lookupTrackHandler instead of looking it up at the end of lookupTrackHandlerClosestToHome after modifying tdb. That was losing child trackHandler settings.
    
• src/hg/js/install.mk
  • lines changed 7, context: html, text, full: html, text
    Added 'top' target for faster development of top-level .js files
    (i.e. skip all of the new subdirs).
    
• src/hg/js/makefile
  • lines changed 4, context: html, text, full: html, text
    Added 'top' target for faster development of top-level .js files
    (i.e. skip all of the new subdirs).
    
• src/hg/lib/annoStreamDb.c
  • lines changed 41, context: html, text, full: html, text
    Discard large-bin items that fall on or after nextChunkStart because they
    will break the (chrom, chromStart) sorting order if they are also to the
    right of small-bin items on or after nextChunkStart -- and they will appear
    again in the next chunk of rows.
    
    Also a couple other fixes for problems found while debugging:
    - there was a spot where I forgot to restart merging after calling
    resetMergeState (when moving on to the next chrom in a genome-wide query)
    - in mergeRow, don't resetMergeState until both big and small queues are empty
    
    refs #15953
    
• src/hg/makeDb/trackDb/human/trackDb.ra
  • lines changed 4, context: html, text, full: html, text
    Add trackHandler settings for snp144* tracks.
    
• src/lib/annoGrateWig.c
  • lines changed 25, context: html, text, full: html, text
    If querying in a region, restrict wiggle values to the part of the region
    that overlaps the primary item, don't just use the bounds of the db rows
    that overlap start/end of region.
    fixes #15952
    
• src/lib/annoGrator.c
  • lines changed 1, context: html, text, full: html, text
    If querying in a region, restrict wiggle values to the part of the region
    that overlaps the primary item, don't just use the bounds of the db rows
    that overlap start/end of region.
    fixes #15952
    
• src/utils/bigWigMerge/tests/makefile
  • lines changed 4, context: html, text, full: html, text
    Set verbose level to 0 so we don't get informational messages cluttering up stderr.