b3aedfa46a48ead09c1cdedf34b07b281ea1ae18 hiram Fri Oct 2 10:41:11 2015 -0700 fixup gcc warnings for -Wunused-but-set-variable refs #16121 diff --git src/jkOwnLib/fuzzyFind.c src/jkOwnLib/fuzzyFind.c index 904446f..577d5af 100644 --- src/jkOwnLib/fuzzyFind.c +++ src/jkOwnLib/fuzzyFind.c @@ -1155,44 +1155,42 @@ static double rwFreq[4]; static boolean rwIsCdna; static boolean rwCheckGoodEnough; static struct ffAli *rwFindTilesBetween(DNA *ns, DNA *ne, DNA *hs, DNA *he, enum ffStringency stringency, double probMax) /* Search for more or less regularly spaced exact matches that are * in the right order. */ { int searchOffset; int endTileOffset; int haySize = he - hs; int needleSize = ne - ns; int numTiles = 0; int bestWeaveVal; -int tileIx; struct ffAli *hitList = NULL; struct ffAli *bestAli; struct ffAli *ali; int possibleTiles; double tileProbOne; possibleTiles = (haySize - nextPowerOfFour(needleSize)); if (possibleTiles < 1) possibleTiles = 1; tileProbOne = probMax/possibleTiles; searchOffset = 0; endTileOffset = 0; -tileIx = 0; for (;;) { DNA *tile; int tileSize; double tileProb; DNA *h = hs; searchOffset = endTileOffset; if (!ffFindGoodOligo(ns+searchOffset, needleSize-searchOffset, tileProbOne, rwFreq, &tile, &tileSize, &tileProb)) { break; } /* Find all parts that match the tile. */ for (;;)