File Changes for markd

v323_preview2 to v323_base (2015-09-28 to 2015-10-05) v323

• src/hg/makeDb/doc/hg38/hg38.txt
  • lines changed 45, context: html, text, full: html, text
    GENCODE V23
    
• src/hg/makeDb/doc/mm10.txt
  • lines changed 44, context: html, text, full: html, text
    GENCODE VM7 import
    
• src/hg/makeDb/outside/gencode/gencodeLoad.mk
  • lines changed 5, context: html, text, full: html, text
    GENCODE V23
    
  • lines changed 10, context: html, text, full: html, text
    GENCODE VM7 import
    
• src/hg/makeDb/schema/all.joiner
  • lines changed 85, context: html, text, full: html, text
    GENCODE V23
    
  • lines changed 85, context: html, text, full: html, text
    GENCODE VM7 import
    
• src/hg/makeDb/trackDb/human/hg38/trackDb.wgEncode.ra
  • lines changed 1, context: html, text, full: html, text
    GENCODE V23
    
• src/hg/makeDb/trackDb/human/hg38/wgEncodeGencodeSuper.html
  • lines changed 5, context: html, text, full: html, text
    GENCODE V23
    
• src/hg/makeDb/trackDb/human/hg38/wgEncodeGencodeV23.html
  • lines changed 333, context: html, text, full: html, text
    GENCODE V23
    
• src/hg/makeDb/trackDb/human/hg38/wgEncodeGencodeV23.ra
  • lines changed 272, context: html, text, full: html, text
    GENCODE V23
    
• src/hg/makeDb/trackDb/mouse/mm10/trackDb.ra
  • lines changed 1, context: html, text, full: html, text
    GENCODE VM7 import
    
• src/hg/makeDb/trackDb/mouse/mm10/wgEncodeGencodeSuper.html
  • lines changed 4, context: html, text, full: html, text
    GENCODE VM7 import
    
• src/hg/makeDb/trackDb/mouse/mm10/wgEncodeGencodeVM7.html
  • lines changed 311, context: html, text, full: html, text
    GENCODE VM7 import
    
• src/hg/makeDb/trackDb/mouse/mm10/wgEncodeGencodeVM7.ra
  • lines changed 267, context: html, text, full: html, text
    GENCODE VM7 import
    
  • lines changed 10, context: html, text, full: html, text
    updated mouse GENCODE to have same filters and highlighting as human
    
• src/hg/pslCDnaFilter/tests/expected/ignoreIntronsTest/drop.psl
  • lines changed 1, context: html, text, full: html, text
    fixed broken test psl now caught by pslCheck
    
• src/hg/pslCDnaFilter/tests/expected/noIgnoreIntronsTest/keep.psl
  • lines changed 1, context: html, text, full: html, text
    fixed broken test psl now caught by pslCheck
    
• src/hg/pslCDnaFilter/tests/input/ignoreIntrons.psl
  • lines changed 1, context: html, text, full: html, text
    fixed broken test psl now caught by pslCheck
    
• src/hg/utils/gff3ToPsl/tests/expected/grch38ToGrch37Test.psl
  • lines changed 18, context: html, text, full: html, text
    fixed various problems detected by making pslCheck more stringent
    
• src/hg/utils/gff3ToPsl/tests/expected/patch1test.psl
  • lines changed 264, context: html, text, full: html, text
    fixed various problems detected by making pslCheck more stringent
    
• src/hg/utils/overlapSelect/chromAnnMap.c
  • lines changed 1, context: html, text, full: html, text
    fixed memory leak that didn't matter
    
• src/hg/utils/pslMap/pslMap.c
  • lines changed 2, context: html, text, full: html, text
    fixed various problems detected by making pslCheck more stringent
    
• src/hg/utils/pslMap/tests/expected/mrnaMapOverChain.mapping.psl
  • lines changed 1, context: html, text, full: html, text
    fixed various problems detected by making pslCheck more stringent
    
• src/hg/utils/pslMap/tests/expected/mrnaMapOverSwap.mapping.psl
  • lines changed 1, context: html, text, full: html, text
    fixed various problems detected by making pslCheck more stringent
    
• src/hg/utils/pslMap/tests/input/mm6ToHg17.psl
  • lines changed 1, context: html, text, full: html, text
    fixed various problems detected by making pslCheck more stringent
    
• src/hg/utils/pslMap/tests/input/retro.psl
  • lines changed 4, context: html, text, full: html, text
    fixed various problems detected by making pslCheck more stringent
    
• src/inc/psl.h
  • lines changed 3, context: html, text, full: html, text
    fixed various problems detected by making pslCheck more stringent
    
• src/lib/psl.c
  • lines changed 35, context: html, text, full: html, text
    fixed various problems detected by making pslCheck more stringent