File Changes for braney

v322_base to v323_preview (2015-09-14 to 2015-09-21) v323

• src/hg/lib/cart.c
  • lines changed 5, context: html, text, full: html, text
    make the "genome" keyword result in the web code setting the position to the default position # no redmine
    
• src/hg/utils/otto/decipher/buildDecipher
  • lines changed 1, context: html, text, full: html, text
    a few changes to the decipher otto scripts to make them less verbose
    
• src/hg/utils/otto/decipher/checkDecipher.sh
  • lines changed 2, context: html, text, full: html, text
    a few changes to the decipher otto scripts to make them less verbose
    
• src/hg/utils/otto/decipher/validateDecipher.sh
  • lines changed 1, context: html, text, full: html, text
    a few changes to the decipher otto scripts to make them less verbose
    
• src/hg/utils/otto/geneReviews/buildGeneReviews.sh
  • lines changed 2, context: html, text, full: html, text
    update to the genereview otto scripts # no redmine
    
• src/hg/utils/otto/geneReviews/checkGeneReviews.sh
  • lines changed 2, context: html, text, full: html, text
    update to the genereview otto scripts # no redmine
    
• src/hg/utils/otto/geneReviews/geneReviewsWrapper.sh
  • lines changed 1, context: html, text, full: html, text
    update to the genereview otto scripts # no redmine
    
• src/hg/utils/otto/geneReviews/makefile
  • lines changed 20, context: html, text, full: html, text
    update to the genereview otto scripts # no redmine
    
• src/hg/utils/otto/geneReviews/validateGeneReviews.sh
  • lines changed 1, context: html, text, full: html, text
    update to the genereview otto scripts # no redmine
    
• src/hg/utils/otto/gwas/checkGwas.sh
  • lines changed 12, context: html, text, full: html, text
    updates to the GWAS otto download files # no redmine
    
• src/hg/utils/otto/gwas/expectedColumns.txt
  • lines changed 32, context: html, text, full: html, text
    updates to the GWAS otto download files # no redmine
    
• src/hg/utils/otto/gwas/makefile
  • lines changed 2, context: html, text, full: html, text
    updates to the GWAS otto download files # no redmine
    
• src/hg/utils/otto/gwas/perlParser.pl
  • lines changed 18, context: html, text, full: html, text
    updates to the GWAS otto download files # no redmine
    
• src/hg/utils/otto/gwas/validateGwas.sh
  • lines changed 3, context: html, text, full: html, text
    updates to the GWAS otto download files # no redmine
    
• src/hg/utils/otto/isca/buildISCA.csh
  • lines changed 43, context: html, text, full: html, text
    new ISCA (ClinGen) process #no redmine
    
• src/hg/utils/otto/isca/checkISCA.sh
  • lines changed 18, context: html, text, full: html, text
    new ISCA (ClinGen) process #no redmine
    
• src/hg/utils/otto/isca/gvfToBed8Attrs.pl
  • lines changed 39, context: html, text, full: html, text
    new ISCA (ClinGen) process #no redmine
    
• src/hg/utils/otto/isca/iscaWrapper.sh
  • lines changed 1, context: html, text, full: html, text
    new ISCA (ClinGen) process #no redmine
    
• src/hg/utils/otto/isca/makefile
  • lines changed 1, context: html, text, full: html, text
    new ISCA (ClinGen) process #no redmine
    
• src/hg/utils/otto/isca/validateISCA.sh
  • lines changed 12, context: html, text, full: html, text
    new ISCA (ClinGen) process #no redmine
    
• src/hg/utils/otto/omim/buildOmimTracks.csh
  • lines changed 4, context: html, text, full: html, text
    added hg38 support to OMIM otto scripts. This has actually been
    happening for a while, but I hadn't checked in the code. no redmine
    
• src/hg/utils/otto/omim/checkOmim.sh
  • lines changed 18, context: html, text, full: html, text
    added hg38 support to OMIM otto scripts. This has actually been
    happening for a while, but I hadn't checked in the code. no redmine
    
• src/hg/utils/otto/omim/checkOmimUpload.sh
  • lines changed 1, context: html, text, full: html, text
    added hg38 support to OMIM otto scripts. This has actually been
    happening for a while, but I hadn't checked in the code. no redmine
    
  • lines changed 17, context: html, text, full: html, text
    update OMIM upload script # no redmine
    
• src/hg/utils/otto/omim/doOmimAv/makefile
  • lines changed 2, context: html, text, full: html, text
    added hg38 support to OMIM otto scripts. This has actually been
    happening for a while, but I hadn't checked in the code. no redmine
    
• src/hg/utils/otto/omim/doOmimGene2/makefile
  • lines changed 2, context: html, text, full: html, text
    added hg38 support to OMIM otto scripts. This has actually been
    happening for a while, but I hadn't checked in the code. no redmine
    
• src/hg/utils/otto/omim/doOmimGeneSymbols/makefile
  • lines changed 2, context: html, text, full: html, text
    added hg38 support to OMIM otto scripts. This has actually been
    happening for a while, but I hadn't checked in the code. no redmine
    
• src/hg/utils/otto/omim/doOmimLocation/makefile
  • lines changed 2, context: html, text, full: html, text
    added hg38 support to OMIM otto scripts. This has actually been
    happening for a while, but I hadn't checked in the code. no redmine