34ce7f92df6d2e8ee6fa188f006cc306fc41b7de max Tue Sep 15 01:51:19 2015 -0700 fixing url in gbib readme diff --git src/browserbox/README.txt src/browserbox/README.txt index 4e4365e..ddf3bcc 100644 --- src/browserbox/README.txt +++ src/browserbox/README.txt @@ -1,37 +1,37 @@ This directory contains the config files that are needed for the Genome Browser in a box. It should be possible to convert a Ubuntu 14 installation into a Genome Browser in a box by copying all these files into the root directory as sudo. (Redmine #11957) See also the main gbib doc page: -http://genomewiki.ucsc.edu/index.php/Genome_Browser_in_a_box_config +http://genomewiki.ucsc.edu/genecats/index.php/Genome_Browser_in_a_Box_config The following symlinks are not in git and have to be set manually : usr/local/apache/htdocs/folders -> /media usr/local/apache/trash -> /data/trash/ usr/local/apache/userdata -> /data/userdata/ var/lib/mysql -> /data/mysql Change ownerships of /data/gbdb, /data/trash and /data/userdata to www-data and /data/mysql to mysql This tree does not include the trash cleaner binaries as they are > 5MB. Ask Hiram to install the trash cleaner if you need it fixed or changed. The directory clientInstall/ contains two small scripts that add the entry "genome.ucsc.local" to the local hosts file. One is written in VisualBasic for Windows, the other is in AppleScript for OSX. The AppleScript version also contains a firewall rule that redirects localhost:1234 to localhost:80, the only way to get a restricted port (<1024) to work with VirtualBox. (Redmine #12834) The Applescript can be packaged into an app with the AppleScript editor. The result can only be copied around as a zip file due to OSX special file attributes. the files packages-ubuntu*.txt are the lists of packages installed on the final gbib in ubuntu13 and ubuntu14. Various changes of the box are documented in root/changes.txt The red box clipart is from http://www.clker.com/clipart-14656.html