File Changes for ceisenhart

v324_preview2 to v324_base (2015-10-19 to 2015-10-26) v324

• src/hg/cirm/cdw/wrangle/addMetaDataToJson/makefile
  • lines changed 2, context: html, text, full: html, text
    Changing the makefile so it is not cluster dependent. Refs #16182
    
• src/hg/cirm/cdw/wrangle/addToStepTables/addToStepTables
  • lines changed 164, context: html, text, full: html, text
    This program is also known as maniMani, were using it on CIRM. refs #16113
    
• src/hg/cirm/cdw/wrangle/addToStepTables/makefile
  • lines changed 6, context: html, text, full: html, text
    This program is also known as maniMani, were using it on CIRM. refs #16113
    
  • lines changed 2, context: html, text, full: html, text
    Changing the makefile so it is not cluster dependent. Refs #16113
    
• src/hg/cirm/cdw/wrangle/condenseMatrix/condenseMatrix
  • lines changed 80, context: html, text, full: html, text
    Finishing this program up, refs #16182
    
• src/hg/cirm/cdw/wrangle/condenseMatrix/makefile
  • lines changed 2, context: html, text, full: html, text
    Changing the makefile so it is not cluster dependent. Refs #16182
    
• src/hg/cirm/cdw/wrangle/kallistoOnFastqMani/kallisto
  • lines changed 0, context: html, text, full: html, text
    Finishing the program kallistoOnFastqMani and adding some dependencies. Refs #16244
    
• src/hg/cirm/cdw/wrangle/kallistoOnFastqMani/kallistoOnFastqMani
  • lines changed 114, context: html, text, full: html, text
    Finishing the program kallistoOnFastqMani and adding some dependencies. Refs #16244
    
• src/hg/cirm/cdw/wrangle/kallistoOnFastqMani/makefile
  • lines changed 6, context: html, text, full: html, text
    Changing the makefile so it is not cluster dependent. Refs #16244
    
• src/hg/cirm/cdw/wrangle/kallistoOnFastqMani/runKallisto.sh
  • lines changed 56, context: html, text, full: html, text
    Finishing the program kallistoOnFastqMani and adding some dependencies. Refs #16244
    
• src/hg/cirm/cdw/wrangle/makeExpMatrix/makeExpMatrix
  • lines changed 47, context: html, text, full: html, text
    Finishing up this program, refs #16182
    
  • lines changed 5, context: html, text, full: html, text
    Finishing this program and adding it to the pipeline, refs #16244
    
• src/hg/cirm/cdw/wrangle/makeExpMatrix/makefile
  • lines changed 2, context: html, text, full: html, text
    Changing the makefile so it is not cluster dependent. Refs #16182
    
• src/hg/cirm/cdw/wrangle/makefile
  • lines changed 22, context: html, text, full: html, text
    Adding a makefile for the cirm wrangle directory. Incorporates python and C flawlessly using the new python framework! No ref for this, general CIRM thing.
    
• src/hg/cirm/cdw/wrangle/rnaSeqToClustersPipeline/makefile
  • lines changed 6, context: html, text, full: html, text
    The first version of this program. Relatively complete still, refs #16244
    
  • lines changed 2, context: html, text, full: html, text
    Adding a check to the argparse module that causes the program to spit help with no arguments. This replicates the C code style. Refs #16156
    
• src/hg/cirm/cdw/wrangle/rnaSeqToClustersPipeline/rnaSeqToClustersPipeline
  • lines changed 176, context: html, text, full: html, text
    The first version of this program. Relatively complete still, refs #16244
    
  • lines changed 78, context: html, text, full: html, text
    Finishing up the pipeline and making it a bit more universal, refs #16244
    
• src/hg/expMatrixToJson/expMatrixToJson.c
  • lines changed 248, context: html, text, full: html, text
    Removed a bunch of cruft, two useless files and added some documentation. Refs #16216
    
• src/hg/expMatrixToJson/forceLayout.json
  • lines changed 247, context: html, text, full: html, text
    Removed a bunch of cruft, two useless files and added some documentation. Refs #16216
    
• src/hg/expMatrixToJson/radialDend.html
  • lines changed 109, context: html, text, full: html, text
    Removed a bunch of cruft, two useless files and added some documentation. Refs #16216
    
• src/hg/makeDb/hgLoadSeq/hgLoadSeq.c
  • lines changed 11, context: html, text, full: html, text
    fixing a bug that causes the extTbl and seq tables to get out of sync, refs #16034
    
• src/utils/newPythonProg/newPythonProg.c
  • lines changed 1, context: html, text, full: html, text
    Changing the makefile produced to not be cluster dependent. Refs #16156
    
  • lines changed 2, context: html, text, full: html, text
    Adding a check to the argparse module that causes the program to spit help with no arguments. This replicates the C code style. Refs #16156