Commits for jcasper

v324_preview2 to v324_base (2015-10-19 to 2015-10-26) v324

• Adding gorGor4 assembly, refs #16220
  
  • src/hg/makeDb/trackDb/gorilla/gorGor4/description.html - lines changed 63, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/gorilla/gorGor4/gap.html - lines changed 31, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/gorilla/gorGor4/gold.html - lines changed 33, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/gorilla/gorGor4/trackDb.ra - lines changed 8, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/makefile - lines changed 1, context: html, text, full: html, text
• Adding base tag to CGI output, refs #16124
  
  • src/hg/lib/web.c - lines changed 1, context: html, text, full: html, text
• Adding colorblindness-friendly colors for upcoming release of new ORegAnno data, refs #15957
  
  • src/hg/hgTracks/simpleTracks.c - lines changed 11, context: html, text, full: html, text
• trackDb changes to support new regulatory categories in updated oreganno tracks while preserving documentation for old tracks refs #15957
  
  • src/hg/makeDb/trackDb/drosophila/dm2/trackDb.ra - lines changed 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/drosophila/dm3/trackDb.ra - lines changed 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/trackDb.ra - lines changed 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/trackDb.ra - lines changed 4, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm9/trackDb.ra - lines changed 4, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/oreganno.html - lines changed 5, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/oregannoOld.html - lines changed 102, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/sacCer/sacCer1/trackDb.ra - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/sacCer/sacCer2/trackDb.ra - lines changed 3, context: html, text, full: html, text
• Fixed logic bug with oreganno filters, also made case-insensitive, refs #16257, #15957
  
  • src/hg/hgTracks/simpleTracks.c - lines changed 3, context: html, text, full: html, text
• Adding support for two additional regulatory classes, refs #15957
  
  • src/hg/lib/oregannoUi.c - lines changed 9, context: html, text, full: html, text
• Adjusting oreganno trackDb settings - no tracks will be left on the old version after release of the new version. refs #15957
  
  • src/hg/makeDb/trackDb/drosophila/dm2/trackDb.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/drosophila/dm3/trackDb.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/trackDb.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/sacCer/sacCer1/trackDb.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/sacCer/sacCer2/trackDb.ra - lines changed 1, context: html, text, full: html, text